Added old firmware and pcb design files

These are all design documents that I thought I had lost. It's may make
me cringe, but it's still cool to use it to see how far I've come.

OSU Robotics Club/OSU Mars Rover/Control Board Firmware/FinalBoardFirmware/WirelessRover/wirelessRover.ino

@@ -0,0 +1,97 @@
+
+#include <SoftwareSerial.h>
+#include <Sabertooth.h>
+
+int SabertoothPin = 8;
+
+int LeftRoverPin = 2;
+int RightRoverPin = 3;
+int KillSwitchPin = 4;
+
+SoftwareSerial SWSerial(NOT_A_PIN, SabertoothPin);
+Sabertooth ST(128, SWSerial);
+
+int Left1;
+int Right1;
+
+int Left;
+int Right;
+
+int LeftPrev = 1500;
+int RightPrev = 1500;
+
+int LeftSmoothVal = 65;
+int RightSmoothVal = 65;
+
+void setup() {
+  SWSerial.begin(9600);
+  ST.autobaud();
+  Serial.begin(9600);
+
+  pinMode(LeftRoverPin, INPUT);
+  pinMode(RightRoverPin, INPUT);
+  pinMode(KillSwitchPin, INPUT);
+}
+
+void loop() {
+
+  Left1 = pulseIn(LeftRoverPin, HIGH);
+  Right1 = pulseIn(RightRoverPin, HIGH);
+  //Left
+  if((LeftPrev > Left1) && ((LeftPrev - Left1) > LeftSmoothVal)){
+    LeftPrev -= LeftSmoothVal;
+    Left = map(LeftPrev, 1000, 2000, -127, 127);
+
+  }
+  else if((LeftPrev < Left1) && ((Left1 - LeftPrev) > LeftSmoothVal)){
+    LeftPrev += LeftSmoothVal;
+    Left = map(LeftPrev, 1000, 2000, -127, 127);
+  }  
+  else{
+    Left = map(Left1, 1000, 2000, -127, 127);
+    LeftPrev = Left1;
+  }
+  //Right
+  if((RightPrev > Right1) && ((RightPrev - Right1) > RightSmoothVal)){
+    RightPrev -= RightSmoothVal;
+    Right = map(RightPrev , 2000, 1000, -127, 127);
+
+  }
+  else if((RightPrev < Right1) && ((Right1 - RightPrev) > RightSmoothVal)){
+    RightPrev += RightSmoothVal;
+    Right = map(RightPrev, 2000, 1000, -127, 127);
+
+  }  
+  else{
+    Right = map(Right1, 2000, 1000, -127, 127);
+    RightPrev = Right1;
+  }
+  //Drive
+  if(((Left1 & Right1) != 0) & (pulseIn(KillSwitchPin, HIGH) > 1500)){
+    ST.motor(1, Left);
+    ST.motor(2, Right);
+  }
+  else{
+    ST.motor(1, 0);
+    ST.motor(2, 0); 
+  }
+}
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/Dechorionator.ino

@@ -0,0 +1,829 @@
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Includes, Defines, Instantiations, and Global Variables//////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Includes
+#include "DualVNH5019MotorShield.h"                  //Library for the motor driver shield
+#include <EEPROM.h>                                  //EEPROM Storage Library for storing config changes
+#include <SoftwareSerial.h>                          //Software Serial Library needed for lcd communications
+#include <StopWatch.h>                               //Stopwatch library for timing purposes
+#include <avr/pgmspace.h>                            //PROGMEM library for storage of config
+#include <String.h>
+
+//Pin Definitions (Arduino Suggested Method)
+const unsigned char LcdTX = 5;                       //Pin connected to LCD RX Line
+
+const unsigned char StartSwitch = 11;                //Pin connected to start switch
+const unsigned char StopSwitch = 13;                 //Pin connected to stop switch
+
+const unsigned char EncoderLed = A2;                 //Pin connected to rotary encoder led
+const unsigned char EncoderButton = A3;              //Pin connected to rotary encoder led
+const unsigned char EncoderChannelB = A4;            //Pin connected to channel A of the rotary encoder
+const unsigned char EncoderChannelA = A5;            //Pin connected to channel B of the rotary encoder
+
+//Instantiations
+SoftwareSerial LcdSerial(3, LcdTX);                  //Software Serial Instantiation with Pin 3 as dummy for RX
+DualVNH5019MotorShield MotorDriver;                  //Motor Driver Library Instantiation
+StopWatch MyStopWatch(StopWatch::SECONDS);           //StopWatch Instantiation for measuring time
+
+enum ArduinoPrograms{                                //Enumeration for defining the arduino program states
+  StandardDechorionation = 0,                        //This is the standard Dechorianation Program
+  TwoFourDechorionation = 1,                         //Used for embryo's 24 hours old
+  PronaseAndRinse = 2,                               //This is an alternating pronase and rinse cycle
+  RinseOnly = 3,                                     //This only does the rinse cycle
+  SDConfig = 4,                                      //Config page for the standard dechorionation
+  TFConfig = 5,                                      //Config page for the 24 hour 
+  PnRConfig = 6,                                     //Config page for Pronase and Rinse
+  ROConfig = 7,                                      //Config page for Rinse Only
+  ProgramSelection = 8                               //Presents a program selection screen
+} ArduinoProgram = ProgramSelection;                 //This selects the arduino program to run
+
+//Global Variables and Constants and Configs
+const unsigned char TitleTimeout = 2;                //Time in seconds to display the main device title
+const unsigned char LcdPageDelay = 3;                //Seconds to wait before the lcd changes pages.
+const unsigned char ConfigPageTimeout = 5;           //Time in seconds to wait before dropping the user back to the program selection screen
+const unsigned int DebounceTimeout = 300;            //Timeout in milliseconds of the button debounce delay
+
+unsigned char DoneOnce = 0;                          //Variable to store whether something has happened or not.
+unsigned char EStop = 0;                             //Variable to store the status of the system's estop button
+unsigned char CycleSkip = 0;                         //Variable to store whether the user wants to skip the current cycle of a program.
+
+signed char SelectedProgram = 0;                     //Holds the current program selection. This is not the currently active program.
+signed char SelectedConfig = 0;                      //Hold the current config selection.
+unsigned char PreviousConfig = 0;                    //A value to hold the previous config value. Used for smoothing the rotary encoder reading.
+
+unsigned char EncoderChannelALastValue = LOW;        //This variable stores the previous state of channel a on the rotary encoder. This is needed to determine direction.
+unsigned char EncoderReferenceVariable = LOW;        //This is a dummy varaible for direction determination on for the rotary encoder.
+
+String ConfigVal;                                    //This is used to store the value returned from PROGMEM and converting it to a char array.
+int NewVal;                                          //This holds the new value
+int PrevVal;                                         //This holds the previous value when changing configs
+
+const unsigned int MaxDriveSpeed = 400;              //Max drive speed value given by the motor driver library
+const unsigned int RotationMinDriveSpeed = 75;       //Minimum value to get the motor to turn
+const unsigned int PumpMinDriveSpeed = 75;           //Minimum value to get the motor to turn
+const unsigned int PumpMaxDriveSpeed = 180;
+unsigned int MaxRampValue = 300;                     //The maximum reasonable value used when ramping the motors
+unsigned int MaxPumpRampValue = 150;
+unsigned int MinRampValue = 1;                       //The minimum reasonable value used when ramping the motors
+unsigned int CycleSeconds;                           //Stores the seconds that each cycle should run for.
+unsigned int DriveLoop;                              //Looping variable for driving motors
+
+
+//| Program List Top | Program List Bottom |
+PROGMEM prog_char* ProgramNames[][2] = {            //Strings for program names shown on the LCD
+  {"1:   Standard   ", "  Dechorionation"},
+  {"2: 24 Hour Old  ", "  Dechorionation"},
+  {"3:  6 Hour HPF  ", "  Dechorionation"},         //Note that "Pronase and Rinse" has been changed to this.
+  {"4: Rinse Cycle  ", "      Only      "}
+};
+
+// |  Main Page Top   |  Main Page Bottom  | Adjust Page Top |        Max Value      |   EEPROM Address  |
+PROGMEM const prog_char* StandardDechorionationConfig[][5] = {
+  {"Pronase Cycle 1 ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)0},
+  {"Pronase Cycle 1 ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)1},
+  {"  Rinse Cycle   ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)2},
+  {"  Rinse Cycle   ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)3},
+  {"Pronase Cycle 2 ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)4},
+  {"Pronase Cycle 2 ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)5},
+  {" Rotation Speed ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)7},
+  {"Rotation Ramping", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)6},
+  {"   Pump Speed   ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)8},
+  {"   Pump Ramp    ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)9}
+};
+
+const unsigned char NumSDConfig = 10;               //Stores the maximum number of available configs
+
+unsigned char EEPROMConfigSD[NumSDConfig] = {       //User Modifiable Standard Dechorionation Config Array
+  6,                                                //Values correspond to each cycle above, in same array order                                 
+  30,                                               //Default values here are for initial EEPROM Programming
+  1,
+  0,
+  10,
+  0,
+  50,
+  75,
+  100,
+  100
+};
+
+// |  Main Page Top   |  Main Page Bottom  | Adjust Page Top |        Max Value      |   EEPROM Address  |
+PROGMEM const prog_char* TwoFourDechorionationConfig[][5] = {
+  {"Pronase Cycle 1 ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)10},
+  {"Pronase Cycle 1 ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)11},
+  {"  Rinse Cycle   ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)12},
+  {"  Rinse Cycle   ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)13},
+  {"Pronase Cycle 2 ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)14},
+  {"Pronase Cycle 2 ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)15},
+  {" Rotation Speed ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)16},
+  {"Rotation Ramping", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)17},
+  {"   Pump Speed   ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)18},
+  {"   Pump Ramp    ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)19}
+};
+
+const unsigned char NumTFConfig = 10;               //Stores the maximum number of available configs
+
+unsigned char EEPROMConfigTF[NumTFConfig] = {       //User Modifiable 24 Hour Dechorionation Config Array
+  3,                                                //Values correspond to each cycle above, in same array order                                 
+  0,                                                //Default values here are for initial EEPROM Programming
+  1,
+  0,
+  10,
+  0,
+  85,
+  85,
+  85,
+  85
+};
+
+// |  Main Page Top   |  Main Page Bottom  | Adjust Page Top |        Max Value      |   EEPROM Address  |
+PROGMEM const prog_char* PronaseAndRinseConfig[][5] = {
+  {"Pronase Cycle 1 ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)10},
+  {"Pronase Cycle 1 ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)11},
+  {"  Rinse Cycle   ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)12},
+  {"  Rinse Cycle   ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)13},
+  {"Pronase Cycle 2 ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)14},
+  {"Pronase Cycle 2 ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)15},
+  {" Rotation Speed ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)16},
+  {"Rotation Ramping", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)17},
+  {"   Pump Speed   ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)18},
+  {"   Pump Ramp    ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)19} 
+};
+
+const unsigned char NumPnRConfig = 10;
+
+unsigned char EEPROMConfigPnR[NumPnRConfig] = {       //User Modifiable Pronase and Rinse Config Array
+  6,                                                  //Values correspond to each cycle above, in same array order                                 
+  30,                                                 //Default values here are for initial EEPROM Programming
+  1,
+  0,
+  10,
+  0,
+  85,
+  85,
+  85,
+  85
+};
+
+// |  Main Page Top   |  Main Page Bottom  | Adjust Page Top |        Max Value      |   EEPROM Address  |
+PROGMEM const prog_char* RinseOnlyConfig[][5] = {
+  {"  Rinse Cycle   ", "    Minutes     ", "    Minutes     ", (const prog_char*)256, (const prog_char*)30},
+  {"  Rinse Cycle   ", "    Seconds     ", "    Seconds     ", (const prog_char*)60, (const prog_char*)31},
+  {"   Pump Speed   ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)32},
+  {"   Pump Ramp    ", "   Percentage   ", "    Percent     ", (const prog_char*)100, (const prog_char*)33}
+};
+
+const unsigned char NumROConfig = 4;
+
+unsigned char EEPROMConfigRO[NumROConfig] = {         //User Modifiable Standard Dechorionation Config Array
+  1,                                                  //Values correspond to each cycle above, in same array order
+  0,                                                  //Default values here are for initial EEPROM Programming
+  85,
+  85
+};
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Arduino Setup////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+
+void setup(){
+  MotorDriver.init();                                                                    //Initialize the VNH5019 Motor Driving Shield
+  InitializePins();                                                                      //Initialize pins for switches, rotary encoder, and leds
+  Serial.begin(115200);                                                                  //Start communicating to PC at 115200 baud
+  LcdSerial.begin(9600);                                                                 //Start communicating with LCD dispaly at 9600 buad
+  delay(TitleTimeout* 500);                                                              //Wait for Lcd to initialize
+  FullLcdClear();                                                                        //Clear the LCD to remove artifacts
+  FullLcdWrite((unsigned char*)"  Tanguay Labs  ", (unsigned char*)"Dechorionator #2");  //Show the device name
+  Serial.println("Dechorionator Initialized");                                           //Debug on Serial
+  delay(TitleTimeout* 1000);                                                             //Wait on name screen
+  FullLcdClear();                                                                        //Clear the LCD
+  //SaveToEEPROM();                                                                      //Used to write initial EEPROM configuration. It should no longer be needed.
+  ReadFromEEPROM();                                                                      //Reads user configured settings from EEPROM into config arrays
+  GetInitialEncoderData();
+}
+
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Main Arduino Program Loop////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+
+void loop(){
+  switch(ArduinoProgram){
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+    case ProgramSelection:
+      if(DoneOnce != 1){ ShowProgramListIntro();}                                        //Show an intro screen if the device has just turned on
+      DisplayProgramList();                                                              //Show the currently selected program title
+      if(CheckProgramStart() | CheckConfigButton()){                                     //If the start button or configuration button are pressed, immediately switch to the new program
+        SelectedConfig = PreviousConfig = 0;                                             //Set config variables to 0 in preperation
+        break;                                                                           //Immediately break if a button has been pressed
+      }                              
+      SelectedProgram = ConstrainProgramList(SelectedProgram + ReturnEncoderDirection());//Determine if the encoder has moved, and change the program display if it has
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////      
+    case StandardDechorionation:
+      EStop = 0;
+     
+//Pronase Cycle 1 
+      FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"Pronase Cycle 1 ");
+      delay(LcdPageDelay*500);
+      CycleSkip = 0;
+      ClearAndRestartStopWatch();      
+      CycleSeconds = ((60*EEPROMConfigSD[0]) + EEPROMConfigSD[1]);
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        for(DriveLoop = RotationMinDriveSpeed ; DriveLoop < MaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigSD[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigSD[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          } 
+        }
+        for( ; DriveLoop >  RotationMinDriveSpeed ; DriveLoop = DriveLoop - ((EEPROMConfigSD[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigSD[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          }
+        }
+         
+      }
+      SoftStopMotor(1);  //Stops Motor 1, rotation motor
+
+//Rinse Cycle   
+      if(!EStop){
+        FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"  Rinse Cycle   ");
+        delay(LcdPageDelay*500);
+        CycleSkip = 0;
+        ClearAndRestartStopWatch();
+        CycleSeconds = ((60*EEPROMConfigSD[2]) + EEPROMConfigSD[3]);
+        
+        for(DriveLoop = PumpMinDriveSpeed ; DriveLoop < PumpMaxDriveSpeed ; DriveLoop = DriveLoop + (((EEPROMConfigSD[9]/4)*MaxPumpRampValue)/100)){
+          MotorDriver.setM2Speed((EEPROMConfigSD[8]*DriveLoop)/100);
+          delay(250);
+        }
+        MotorDriver.setM2Speed((EEPROMConfigSD[8]*PumpMaxDriveSpeed)/100);
+      }
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+        if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+        }  
+      }
+      SoftStopMotor(2);
+      
+//Pronase Cycle 2    
+      if(!EStop){
+        FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"Pronase Cycle 2 ");
+        delay(LcdPageDelay*500);
+        CycleSkip = 0;
+        ClearAndRestartStopWatch();      
+        CycleSeconds = ((60*EEPROMConfigSD[4]) + EEPROMConfigSD[5]);
+      }
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        for(DriveLoop = RotationMinDriveSpeed ; DriveLoop < MaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigSD[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigSD[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          } 
+        }
+        for( ; DriveLoop >  RotationMinDriveSpeed ; DriveLoop = DriveLoop - ((EEPROMConfigSD[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigSD[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          }
+        }
+         
+      }
+      SoftStopMotor(1);  //Stops Motor 1, rotation motor
+      
+      
+      EStop = 0;
+      GoToProgramSelection();
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+    case TwoFourDechorionation:
+      
+      EStop = 0;
+     
+//Pronase Cycle 1 
+      FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"Pronase Cycle 1 ");
+      delay(LcdPageDelay*500);
+      CycleSkip = 0;
+      ClearAndRestartStopWatch();      
+      CycleSeconds = ((60*EEPROMConfigTF[0]) + EEPROMConfigTF[1]);
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        for(DriveLoop = RotationMinDriveSpeed ; DriveLoop < MaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigTF[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigTF[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          } 
+        }
+        for( ; DriveLoop >  RotationMinDriveSpeed ; DriveLoop = DriveLoop - ((EEPROMConfigTF[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigTF[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          }
+        }
+         
+      }
+      SoftStopMotor(1);  //Stops Motor 1, rotation motor
+
+//Rinse Cycle   
+      if(!EStop){
+        FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"  Rinse Cycle   ");
+        delay(LcdPageDelay*500);
+        CycleSkip = 0;
+        ClearAndRestartStopWatch();
+        CycleSeconds = ((60*EEPROMConfigTF[2]) + EEPROMConfigTF[3]);
+        
+        for(DriveLoop = PumpMinDriveSpeed ; DriveLoop < PumpMaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigTF[9]*MaxPumpRampValue)/100)){
+          MotorDriver.setM2Speed((EEPROMConfigTF[8]*DriveLoop)/100);
+        }
+        MotorDriver.setM2Speed((EEPROMConfigTF[8]*PumpMaxDriveSpeed)/100);
+      }
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+        if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+        }  
+      }
+      SoftStopMotor(2);
+      
+//Pronase Cycle 2    
+      if(!EStop){
+        FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"Pronase Cycle 2 ");
+        delay(LcdPageDelay*500);
+        CycleSkip = 0;
+        ClearAndRestartStopWatch();      
+        CycleSeconds = ((60*EEPROMConfigTF[4]) + EEPROMConfigTF[5]);
+      }
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        for(DriveLoop = RotationMinDriveSpeed ; DriveLoop < MaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigTF[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigTF[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          } 
+        }
+        for( ; DriveLoop >  RotationMinDriveSpeed ; DriveLoop = DriveLoop - ((EEPROMConfigTF[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigTF[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          }
+        }
+         
+      }
+      SoftStopMotor(1);  //Stops Motor 1, rotation motor
+      
+      
+      EStop = 0;
+      GoToProgramSelection();
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////    
+    case PronaseAndRinse:
+      EStop = 0;
+     
+//Pronase Cycle 1
+      FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"Pronase Cycle 1 ");
+      delay(LcdPageDelay*500);
+      CycleSkip = 0;
+      ClearAndRestartStopWatch();      
+      CycleSeconds = ((60*EEPROMConfigPnR[0]) + EEPROMConfigPnR[1]);
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        for(DriveLoop = RotationMinDriveSpeed ; DriveLoop < MaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigPnR[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigPnR[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          } 
+        }
+        for( ; DriveLoop >  RotationMinDriveSpeed ; DriveLoop = DriveLoop - ((EEPROMConfigPnR[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigPnR[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          }
+        }
+         
+      }
+      SoftStopMotor(1);  //Stops Motor 1, rotation motor
+
+//Rinse Cycle   
+      if(!EStop){
+        FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"  Rinse Cycle   ");
+        delay(LcdPageDelay*500);
+        CycleSkip = 0;
+        ClearAndRestartStopWatch();
+        CycleSeconds = ((60*EEPROMConfigPnR[2]) + EEPROMConfigPnR[3]);
+        
+        for(DriveLoop = PumpMinDriveSpeed ; DriveLoop < PumpMaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigPnR[9]*MaxPumpRampValue)/100)){
+          MotorDriver.setM2Speed((EEPROMConfigPnR[8]*DriveLoop)/100);
+        }
+        MotorDriver.setM2Speed((EEPROMConfigPnR[8]*PumpMaxDriveSpeed)/100);
+      }
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+        if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+        }  
+      }
+      SoftStopMotor(2);
+      
+//Pronase Cycle 2    
+      if(!EStop){
+        FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"Pronase Cycle 2 ");
+        delay(LcdPageDelay*500);
+        CycleSkip = 0;
+        ClearAndRestartStopWatch();      
+        CycleSeconds = ((60*EEPROMConfigPnR[4]) + EEPROMConfigPnR[5]);
+      }
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        for(DriveLoop = RotationMinDriveSpeed ; DriveLoop < MaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigPnR[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigPnR[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          } 
+        }
+        for( ; DriveLoop >  RotationMinDriveSpeed ; DriveLoop = DriveLoop - ((EEPROMConfigPnR[7]*MaxRampValue)/100)){
+          MotorDriver.setM1Speed((DriveLoop * EEPROMConfigPnR[6])/100);
+          LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+          if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+          }
+        }
+         
+      }
+      SoftStopMotor(1);  //Stops Motor 1, rotation motor
+      
+      
+      EStop = 0;
+      GoToProgramSelection();
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////    
+    case RinseOnly:
+      EStop = 0;
+      
+      if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+      FullLcdWrite((unsigned char*)"    Starting    ",(unsigned char*)"  Rinse Cycle   ");
+      
+      if(!EStop){
+        delay(LcdPageDelay*500);
+        CycleSkip = 0;
+        ClearAndRestartStopWatch();
+        CycleSeconds = ((60*EEPROMConfigRO[0]) + EEPROMConfigRO[1]);
+        
+        for(DriveLoop = PumpMinDriveSpeed ; DriveLoop < PumpMaxDriveSpeed ; DriveLoop = DriveLoop + ((EEPROMConfigRO[3]*MaxPumpRampValue)/100)){
+          MotorDriver.setM2Speed((EEPROMConfigRO[2]*DriveLoop)/100);
+        }
+        MotorDriver.setM2Speed((EEPROMConfigRO[8]*PumpMaxDriveSpeed)/100);
+      }
+      while(MyStopWatch.elapsed() < CycleSeconds & !EStop & !CycleSkip){
+        LcdFullWriteString((unsigned char*)" Time Remaining ",("      " + String((CycleSeconds - MyStopWatch.elapsed()), DEC) + "         "));
+        if(digitalRead(StopSwitch) == LOW){
+            SoftStopMotor(1);
+            GoToProgramSelection();
+            EStop = 1;
+            break; 
+          }
+          if(digitalRead(StartSwitch) == LOW){
+            delay(DebounceTimeout);
+            CycleSkip = 1;
+            break;
+        }  
+      }
+      SoftStopMotor(2);
+      
+      EStop = 0;
+      GoToProgramSelection();
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////    
+    case SDConfig:
+      ClearAndRestartStopWatch();;
+      
+      while(MyStopWatch.elapsed() < (ConfigPageTimeout)){
+        if(PreviousConfig != SelectedConfig ){
+          ClearAndRestartStopWatch();
+          
+        }
+        
+        ShowSDConfigMainScreen();
+        if(digitalRead(EncoderButton) == LOW){
+          MyStopWatch.stop();
+          delay(DebounceTimeout);
+          PrevVal = NewVal = (int)EEPROMConfigSD[SelectedConfig];
+          ConfigVal = "      " + String(NewVal, DEC) + "         ";
+          ShowSDConfigIndividualConfigScreen();
+          while(digitalRead(EncoderButton) == HIGH){
+            NewVal = SDConfigIndividualConstrain(NewVal + ReturnEncoderDirection());
+            if(NewVal != PrevVal){
+              PrevVal = NewVal;
+              ConfigVal = "      " + String(NewVal, DEC) + "         ";
+              ShowSDConfigIndividualConfigScreen(); 
+            }        
+          }
+          EEPROMConfigSD[SelectedConfig] = NewVal;
+          delay(DebounceTimeout);
+          ClearAndRestartStopWatch();
+          
+        }    
+        PreviousConfig = SelectedConfig;
+        SelectedConfig = SDConfigMainConstrain(SelectedConfig += ReturnEncoderDirection());   
+
+        if(digitalRead(StartSwitch) == LOW){
+          GoToProgramSelection();
+          SDConfigSaveToEEPROM();
+          LcdWriteSavingScreen();
+          break; 
+        }
+        if(digitalRead(StopSwitch) == LOW){
+          GoToProgramSelection();
+          break; 
+        }
+      }
+      GoToProgramSelection();
+      
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////    
+    case TFConfig:
+      ClearAndRestartStopWatch();
+      
+      while(MyStopWatch.elapsed() < (ConfigPageTimeout)){
+        if(PreviousConfig != SelectedConfig ){
+          ClearAndRestartStopWatch();
+          
+        }
+        
+        ShowTFConfigMainScreen();
+        if(digitalRead(EncoderButton) == LOW){
+          MyStopWatch.stop();
+          delay(DebounceTimeout);
+          PrevVal = NewVal = (int)EEPROMConfigTF[SelectedConfig];
+          ConfigVal = "      " + String(NewVal, DEC) + "         ";
+          ShowTFConfigIndividualConfigScreen();
+          while(digitalRead(EncoderButton) == HIGH){
+            NewVal = TFConfigIndividualConstrain(NewVal + ReturnEncoderDirection());
+            if(NewVal != PrevVal){
+              PrevVal = NewVal;
+              ConfigVal = "      " + String(NewVal, DEC) + "         ";
+              ShowTFConfigIndividualConfigScreen(); 
+            }        
+          }
+          EEPROMConfigTF[SelectedConfig] = NewVal;
+          delay(DebounceTimeout);
+          ClearAndRestartStopWatch();
+          
+        }    
+        PreviousConfig = SelectedConfig;
+        SelectedConfig = TFConfigMainConstrain(SelectedConfig += ReturnEncoderDirection());   
+
+        if(digitalRead(StartSwitch) == LOW){
+          GoToProgramSelection();
+          TFConfigSaveToEEPROM();
+          LcdWriteSavingScreen();
+          break; 
+        }
+        if(digitalRead(StopSwitch) == LOW){
+          GoToProgramSelection();
+          break; 
+        }
+      }
+      GoToProgramSelection();
+      
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////    
+    case PnRConfig:
+      ClearAndRestartStopWatch();
+      
+      while(MyStopWatch.elapsed() < (ConfigPageTimeout)){
+        if(PreviousConfig != SelectedConfig ){
+          ClearAndRestartStopWatch();
+          
+        }
+        
+        ShowPnRConfigMainScreen();
+        if(digitalRead(EncoderButton) == LOW){
+          MyStopWatch.stop();
+          delay(DebounceTimeout);
+          PrevVal = NewVal = (int)EEPROMConfigPnR[SelectedConfig];
+          ConfigVal = "      " + String(NewVal, DEC) + "         ";
+          ShowPnRConfigIndividualConfigScreen();
+          while(digitalRead(EncoderButton) == HIGH){
+            NewVal = PnRConfigIndividualConstrain(NewVal + ReturnEncoderDirection());
+            if(NewVal != PrevVal){
+              PrevVal = NewVal;
+              ConfigVal = "      " + String(NewVal, DEC) + "         ";
+              ShowPnRConfigIndividualConfigScreen(); 
+            }        
+          }
+          EEPROMConfigPnR[SelectedConfig] = NewVal;
+          delay(DebounceTimeout);
+          ClearAndRestartStopWatch();
+          
+        }    
+        PreviousConfig = SelectedConfig;
+        SelectedConfig = PnRConfigMainConstrain(SelectedConfig += ReturnEncoderDirection());   
+
+        if(digitalRead(StartSwitch) == LOW){
+          GoToProgramSelection();
+          PnRConfigSaveToEEPROM();
+          LcdWriteSavingScreen();
+          break; 
+        }
+        if(digitalRead(StopSwitch) == LOW){
+          GoToProgramSelection();
+          break; 
+        }
+      }
+      GoToProgramSelection();
+      
+      break;
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////    
+    case ROConfig:
+      ClearAndRestartStopWatch();
+      
+      while(MyStopWatch.elapsed() < (ConfigPageTimeout)){
+        if(PreviousConfig != SelectedConfig ){
+          ClearAndRestartStopWatch();
+          
+        }
+        
+        ShowROConfigMainScreen();
+        if(digitalRead(EncoderButton) == LOW){
+          MyStopWatch.stop();
+          delay(DebounceTimeout);
+          PrevVal = NewVal = (int)EEPROMConfigRO[SelectedConfig];
+          ConfigVal = "      " + String(NewVal, DEC) + "         ";
+          ShowROConfigIndividualConfigScreen();
+          while(digitalRead(EncoderButton) == HIGH){
+            NewVal = ROConfigIndividualConstrain(NewVal + ReturnEncoderDirection());
+            if(NewVal != PrevVal){
+              PrevVal = NewVal;
+              ConfigVal = "      " + String(NewVal, DEC) + "         ";
+              ShowROConfigIndividualConfigScreen(); 
+            }        
+          }
+          EEPROMConfigRO[SelectedConfig] = NewVal;
+          delay(DebounceTimeout);
+          ClearAndRestartStopWatch();
+          
+        }    
+        PreviousConfig = SelectedConfig;
+        SelectedConfig = ROConfigMainConstrain(SelectedConfig += ReturnEncoderDirection());   
+
+        if(digitalRead(StartSwitch) == LOW){
+          GoToProgramSelection();
+          ROConfigSaveToEEPROM();
+          LcdWriteSavingScreen();
+          break; 
+        }
+        if(digitalRead(StopSwitch) == LOW){
+          GoToProgramSelection();
+          break; 
+        }
+      }
+      GoToProgramSelection();
+      break;        
+///////////////////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////    
+    default:
+      FullLcdWrite((unsigned char*)"Fatal Error   ", (unsigned char*)"Contact Support ");
+      while(1);
+      break;
+  };
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/LCD_Functions.ino

@@ -0,0 +1,52 @@
+void LcdMoveToTop(){
+  LcdSerial.write(254);  //Put LCD into move mode
+  LcdSerial.write(128);  //Move to the first character of the first row
+}
+
+void LcdMoveToBottom(){
+  LcdSerial.write(254);  //Put LCD into move mode
+  LcdSerial.write(192);  //Move to the first character of the second row
+}
+
+void FullLcdClear(){
+  LcdSerial.write(254); //Send special command character
+  LcdSerial.write(1);   //Send Clear Screen Command
+}
+
+void TopLcdClear(){
+  LcdMoveToTop();
+  LcdSerial.write("                ");  //Write a blank 16 character string
+}
+
+void BottomLcdClear(){
+  LcdMoveToBottom();
+  LcdSerial.write("                ");  //Write a blank 16 character string
+}
+
+void FullLcdWrite(unsigned char* TopLcd, unsigned char* BottomLcd){
+  TopLcdWrite(TopLcd);
+  BottomLcdWrite(BottomLcd);
+}
+
+void TopLcdWrite(unsigned char *TopLcd){
+  LcdMoveToTop();
+  LcdSerial.write((const char*)TopLcd);  //Write string
+  
+}
+
+void BottomLcdWrite(unsigned char *BottomLcd){
+  LcdMoveToBottom();
+  LcdSerial.write((const char*)BottomLcd);  //Write string
+}
+
+void LcdFullWriteString(unsigned char* TopLcd, String BottomLcd){
+  TopLcdWrite(TopLcd);
+  LcdMoveToBottom();
+  LcdSerial.print(BottomLcd);
+}
+
+void LcdWriteSavingScreen(){
+  FullLcdWrite((unsigned char*)" Settings Saved ",(unsigned char*)"  Sucessfully   ");
+  delay(1500);
+  
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/Other_Functions.ino

@@ -0,0 +1,56 @@
+void ReadFromEEPROM(){
+  SDConfigLoadFromEEPROM();
+  TFConfigLoadFromEEPROM();
+  PnRConfigLoadFromEEPROM();
+  ROConfigLoadFromEEPROM();
+}
+
+void SaveToEEPROM(){
+  SDConfigSaveToEEPROM();
+  TFConfigSaveToEEPROM();
+  PnRConfigSaveToEEPROM();
+  ROConfigSaveToEEPROM();
+}
+
+void DisplayProgramList(){
+  FullLcdWrite((unsigned char*)pgm_read_word(&ProgramNames[SelectedProgram][0]), (unsigned char*)pgm_read_word(&ProgramNames[SelectedProgram][1]));  
+}
+
+void GetInitialEncoderData(){
+  EncoderChannelALastValue = EncoderReferenceVariable = digitalRead(EncoderChannelA);  
+}
+
+signed char ReturnEncoderDirection(){
+  EncoderReferenceVariable = digitalRead(EncoderChannelA);
+  if((EncoderChannelALastValue == LOW) && (EncoderReferenceVariable == HIGH)){
+    if(digitalRead(EncoderChannelB) == LOW){
+      EncoderChannelALastValue = EncoderReferenceVariable;;
+      return 1;
+    }else{
+      EncoderChannelALastValue = EncoderReferenceVariable;
+      return -1;
+    }  
+  }
+  EncoderChannelALastValue = EncoderReferenceVariable;
+  return 0;  
+}
+
+void ClearAndRestartStopWatch(){
+  MyStopWatch.reset();
+  MyStopWatch.start();
+}
+
+void SoftStopMotor(unsigned char Motor){
+  if(Motor == 1){
+    for( ; DriveLoop != RotationMinDriveSpeed ; DriveLoop--){
+      MotorDriver.setM1Speed(DriveLoop);
+    }
+    MotorDriver.setM1Speed(0);   
+  }
+  else if(Motor == 2){
+    for( ; DriveLoop != PumpMinDriveSpeed ; DriveLoop--){
+      MotorDriver.setM2Speed(DriveLoop);
+    }
+    MotorDriver.setM2Speed(0);
+  }  
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/ProgramSelection.ino

@@ -0,0 +1,39 @@
+void ShowProgramListIntro(){
+  FullLcdWrite((unsigned char*)"Select Program, ",(unsigned char*)"Press Start     ");  //Show the start screen
+  delay(TitleTimeout* 1000);  //Wait for three seconds
+  FullLcdClear();
+  DoneOnce  = 1;  //Set DoneOnce to 1 so we know it's been started for the first time
+  EStop = 0;  
+}
+
+signed char ConstrainProgramList(signed char ProgramList){
+  if(ProgramList == -1){
+    return 3;
+  }else if(ProgramList == 4){
+    return 0;
+  }
+}
+
+unsigned char CheckConfigButton(){
+  if(digitalRead(EncoderButton) == LOW){
+    delay(DebounceTimeout);
+    SelectedConfig = 0;
+    ArduinoProgram = ArduinoPrograms((char)SelectedProgram + 4);
+    return 1;
+  }
+ return 0; 
+}
+
+unsigned char CheckProgramStart(){
+  if(digitalRead(StartSwitch) == LOW){
+    ArduinoProgram = (ArduinoPrograms)SelectedProgram;  //Change arduino program selector to the new one
+    return 1;
+  } 
+  return 0;
+}
+
+void GoToProgramSelection(){
+  delay(DebounceTimeout);
+  ArduinoProgram = ProgramSelection;
+}
+

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/Pronase_and_Rinse.ino

@@ -0,0 +1,39 @@
+void ShowPnRConfigMainScreen(){
+  FullLcdWrite((unsigned char*)pgm_read_word(&PronaseAndRinseConfig[SelectedConfig][0]), (unsigned char*)pgm_read_word(&PronaseAndRinseConfig[SelectedConfig][1]));
+}
+
+void ShowPnRConfigIndividualConfigScreen(){
+  LcdFullWriteString((unsigned char*)pgm_read_word(&PronaseAndRinseConfig[SelectedConfig][2]), ConfigVal);
+}
+
+int PnRConfigMainConstrain(signed int Constrain){
+  int Constraint = NumPnRConfig - 1;
+  if(Constrain > Constraint){
+    Constrain = (NumPnRConfig - 1);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+int PnRConfigIndividualConstrain(signed int Constrain){
+  int Constraint = (int)pgm_read_word(&PronaseAndRinseConfig[SelectedConfig][3]);
+  if(Constrain > Constraint){
+    Constrain = (int)pgm_read_word(&PronaseAndRinseConfig[SelectedConfig][3]);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+void PnRConfigLoadFromEEPROM(){
+  for(int i = 0 ; i < NumPnRConfig ; i++){
+   EEPROMConfigPnR[i] = EEPROM.read(pgm_read_word(&PronaseAndRinseConfig[i][4]));
+  }
+}
+
+void PnRConfigSaveToEEPROM(){
+  for(int i = 0 ; i < NumPnRConfig ; i++){
+    EEPROM.write(pgm_read_word(&PronaseAndRinseConfig[i][4]),EEPROMConfigPnR[i]);
+  }
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/Rinse_Only.ino

@@ -0,0 +1,39 @@
+void ShowROConfigMainScreen(){
+  FullLcdWrite((unsigned char*)pgm_read_word(&RinseOnlyConfig[SelectedConfig][0]), (unsigned char*)pgm_read_word(&RinseOnlyConfig[SelectedConfig][1]));
+}
+
+void ShowROConfigIndividualConfigScreen(){
+  LcdFullWriteString((unsigned char*)pgm_read_word(&RinseOnlyConfig[SelectedConfig][2]), ConfigVal);
+}
+
+int ROConfigMainConstrain(signed int Constrain){
+  int Constraint = NumROConfig - 1;
+  if(Constrain > Constraint){
+    Constrain = (NumROConfig - 1);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+int ROConfigIndividualConstrain(signed int Constrain){
+  int Constraint = (int)pgm_read_word(&RinseOnlyConfig[SelectedConfig][3]);
+  if(Constrain > Constraint){
+    Constrain = (int)pgm_read_word(&RinseOnlyConfig[SelectedConfig][3]);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+void ROConfigLoadFromEEPROM(){
+  for(int i = 0 ; i < NumROConfig ; i++){
+   EEPROMConfigRO[i] = EEPROM.read(pgm_read_word(&RinseOnlyConfig[i][4]));
+  }
+}
+
+void ROConfigSaveToEEPROM(){
+  for(int i = 0 ; i < NumROConfig ; i++){
+    EEPROM.write(pgm_read_word(&RinseOnlyConfig[i][4]),EEPROMConfigRO[i]);
+  }
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/Setup_and_Config.ino

@@ -0,0 +1,15 @@
+void InitializePins(){
+  pinMode(StartSwitch, INPUT); //Set Start Switch Pin to Input
+  pinMode(StopSwitch, INPUT); //Set Stop Switch Pin to Input
+  digitalWrite(StartSwitch, HIGH); //Set the internal pullup resistor for the switch
+  digitalWrite(StopSwitch, HIGH);  //Set the internal pullup resistor for the switch
+  
+  pinMode(EncoderLed, OUTPUT); //Set LED Pin to Output
+  pinMode(EncoderButton, INPUT); //Set Encoder Button Pin to Input
+  pinMode(EncoderChannelA, INPUT); //Set Encoder Channel A Pin to Input
+  pinMode(EncoderChannelB, INPUT); //Set Encoder Channel B Pin to Input
+  digitalWrite(EncoderLed, HIGH);
+  digitalWrite(EncoderButton, HIGH); //Set the internal pullup resistor for the switch
+  digitalWrite(EncoderChannelA, HIGH); //Set the internal pullup resistor for the switch
+  digitalWrite(EncoderChannelB, HIGH); //Set the internal pullup resistor for the switch
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/Standard_Dechorionation.ino

@@ -0,0 +1,49 @@
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Program Functions////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+
+
+
+
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Config Functions/////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+void ShowSDConfigMainScreen(){
+  FullLcdWrite((unsigned char*)pgm_read_word(&StandardDechorionationConfig[SelectedConfig][0]), (unsigned char*)pgm_read_word(&StandardDechorionationConfig[SelectedConfig][1]));
+}
+
+void ShowSDConfigIndividualConfigScreen(){
+  LcdFullWriteString((unsigned char*)pgm_read_word(&StandardDechorionationConfig[SelectedConfig][2]), ConfigVal);
+}
+
+int SDConfigMainConstrain(signed int Constrain){
+  int Constraint = NumSDConfig - 1;
+  if(Constrain > Constraint){
+    Constrain = (NumSDConfig - 1);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+int SDConfigIndividualConstrain(signed int Constrain){
+  int Constraint = (int)pgm_read_word(&StandardDechorionationConfig[SelectedConfig][3]);
+  if(Constrain > Constraint){
+    Constrain = (int)pgm_read_word(&StandardDechorionationConfig[SelectedConfig][3]);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+void SDConfigLoadFromEEPROM(){
+  for(int i = 0 ; i < NumSDConfig ; i++){
+   EEPROMConfigSD[i] = EEPROM.read(pgm_read_word(&StandardDechorionationConfig[i][4]));
+  }
+}
+
+void SDConfigSaveToEEPROM(){
+  for(int i = 0 ; i < NumSDConfig ; i++){
+    EEPROM.write(pgm_read_word(&StandardDechorionationConfig[i][4]),EEPROMConfigSD[i]);
+  }
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/Twenty_Four_Config.ino

@@ -0,0 +1,39 @@
+void ShowTFConfigMainScreen(){
+  FullLcdWrite((unsigned char*)pgm_read_word(&TwoFourDechorionationConfig[SelectedConfig][0]), (unsigned char*)pgm_read_word(&TwoFourDechorionationConfig[SelectedConfig][1]));
+}
+
+void ShowTFConfigIndividualConfigScreen(){
+  LcdFullWriteString((unsigned char*)pgm_read_word(&TwoFourDechorionationConfig[SelectedConfig][2]), ConfigVal);
+}
+
+int TFConfigMainConstrain(signed int Constrain){
+  int Constraint = NumTFConfig - 1;
+  if(Constrain > Constraint){
+    Constrain = (NumTFConfig - 1);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+int TFConfigIndividualConstrain(signed int Constrain){
+  int Constraint = (int)pgm_read_word(&TwoFourDechorionationConfig[SelectedConfig][3]);
+  if(Constrain > Constraint){
+    Constrain = (int)pgm_read_word(&TwoFourDechorionationConfig[SelectedConfig][3]);
+  }else if(Constrain < 0){
+    Constrain = 0;
+  }
+  return Constrain;
+}
+
+void TFConfigLoadFromEEPROM(){
+  for(int i = 0 ; i < NumTFConfig ; i++){
+   EEPROMConfigTF[i] = EEPROM.read(pgm_read_word(&TwoFourDechorionationConfig[i][4]));
+  }
+}
+
+void TFConfigSaveToEEPROM(){
+  for(int i = 0 ; i < NumTFConfig ; i++){
+    EEPROM.write(pgm_read_word(&TwoFourDechorionationConfig[i][4]),EEPROMConfigTF[i]);
+  }
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 0.1/User Manual.lyx

@@ -0,0 +1,528 @@
+#LyX 2.0 created this file. For more info see http://www.lyx.org/
+\lyxformat 413
+\begin_document
+\begin_header
+\textclass article
+\use_default_options true
+\maintain_unincluded_children false
+\language english
+\language_package default
+\inputencoding auto
+\fontencoding global
+\font_roman default
+\font_sans default
+\font_typewriter default
+\font_default_family default
+\use_non_tex_fonts false
+\font_sc false
+\font_osf false
+\font_sf_scale 100
+\font_tt_scale 100
+
+\graphics default
+\default_output_format default
+\output_sync 0
+\bibtex_command default
+\index_command default
+\paperfontsize default
+\spacing single
+\use_hyperref false
+\papersize default
+\use_geometry false
+\use_amsmath 1
+\use_esint 1
+\use_mhchem 1
+\use_mathdots 1
+\cite_engine basic
+\use_bibtopic false
+\use_indices false
+\paperorientation portrait
+\suppress_date true
+\use_refstyle 1
+\index Index
+\shortcut idx
+\color #008000
+\end_index
+\secnumdepth 3
+\tocdepth 3
+\paragraph_separation indent
+\paragraph_indentation default
+\quotes_language english
+\papercolumns 1
+\papersides 1
+\paperpagestyle default
+\tracking_changes false
+\output_changes false
+\html_math_output 0
+\html_css_as_file 0
+\html_be_strict false
+\end_header
+
+\begin_body
+
+\begin_layout Title
+
+\series bold
+Dechorionation Table User Manual - Draft
+\end_layout
+
+\begin_layout Standard
+\align center
+Sinhubber Aquatic Research Laboratory
+\end_layout
+
+\begin_layout Standard
+\align center
+Oregon State University
+\end_layout
+
+\begin_layout Standard
+\align center
+Corwin Perren
+\end_layout
+
+\begin_layout Standard
+\begin_inset Newpage pagebreak
+\end_inset
+
+
+\end_layout
+
+\begin_layout Part*
+Firmware Rev 1.0
+\end_layout
+
+\begin_layout Section*
+Using the Dechorionator
+\end_layout
+
+\begin_layout Enumerate
+Turn on the Dechorionator using the power switch located on the rear of
+ the unit.
+\end_layout
+
+\begin_layout Enumerate
+Wait until the device has finished powering up and shows the program selection
+ screen.
+\end_layout
+
+\begin_layout Enumerate
+Rotate the selection knob until the desired program is shown.
+\end_layout
+
+\begin_layout Enumerate
+Press the green start button to begin the program.
+\end_layout
+
+\begin_layout Enumerate
+To skip a particular cycle in a program, press the start button.
+\end_layout
+
+\begin_layout Enumerate
+Press the stop button at any time to immediately end the currently running
+ program and return to the selection screen.
+\end_layout
+
+\begin_layout Section*
+Changing Settings
+\end_layout
+
+\begin_layout Enumerate
+Rotate the selection knob until the program containing the settings you
+ would like to modify is shown.
+\end_layout
+
+\begin_layout Enumerate
+Press the knob to enter the settings editor for that program.
+\end_layout
+
+\begin_layout Enumerate
+Rotate the selection knob until the setting you would like to change is
+ shown.
+\end_layout
+
+\begin_layout Enumerate
+Press the knob to enter the setting's edit screen.
+\end_layout
+
+\begin_layout Enumerate
+Rotate the selection knob until the desired value is displayed.
+\end_layout
+
+\begin_layout Enumerate
+Press the knob to save the new value and return to the settings selection
+ screen.
+\end_layout
+
+\begin_layout Enumerate
+Repeat for any other settings you would like to change for the selected
+ program.
+\end_layout
+
+\begin_layout Enumerate
+Saving Settings
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Save settings temporarily (Does not persist through reboots).
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Return to the settings selection screen.
+\end_layout
+
+\begin_layout Enumerate
+Press the stop button or wait for a few seconds for it to timeout.
+\end_layout
+
+\begin_layout Enumerate
+You will be returned to the main program selection screen and any modified
+ settings will be applied until a reboot.
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Save settings permanently (Settings will persist through reboots).
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Return to the settings selection screen.
+\end_layout
+
+\begin_layout Enumerate
+Press the start button.
+\end_layout
+
+\begin_layout Enumerate
+\begin_inset Quotes eld
+\end_inset
+
+Settings Saved Sucessfully
+\begin_inset Quotes erd
+\end_inset
+
+ should display breifly before returning to the main program selection screen.
+\end_layout
+
+\end_deeper
+\end_deeper
+\begin_layout Section*
+Program Cycle Information and Settings Defaults
+\end_layout
+
+\begin_layout Standard
+
+\shape italic
+Note that cycles are in order and motor settings apply to all cycles for
+ a given program.
+\end_layout
+
+\begin_layout Subsubsection*
+Standard Dechorionation Cycles
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 1
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Pronase Cycle 1 - Minutes : 
+\series bold
+6
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 1 - Seconds : 
+\series bold
+30
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Rinse Cycle
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Rinse Cycle - Minutes : 
+\series bold
+1
+\end_layout
+
+\begin_layout Enumerate
+Rinse Cycle - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Pronase Cycle 2
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Pronase Cycle 2 - Minutes : 
+\series bold
+10
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 2 - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Motor Settings
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Rotation Speed - Percentage : 
+\series bold
+85
+\end_layout
+
+\begin_layout Enumerate
+Rotation Ramping Percentage : 
+\series bold
+85
+\end_layout
+
+\begin_layout Enumerate
+Pump Speed : 
+\series bold
+50
+\end_layout
+
+\begin_layout Enumerate
+Pump ramp : 
+\series bold
+85
+\end_layout
+
+\end_deeper
+\begin_layout Subsubsection*
+24 Hour Dechorionation Cycles
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 1
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Pronase Cycle 1 - Minutes : 
+\series bold
+3
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 1 - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Rinse Cycle
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Rinse Cycle - Minutes : 
+\series bold
+1
+\end_layout
+
+\begin_layout Enumerate
+Rinse Cycle - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Pronase Cycle 2
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Pronase Cycle 2 - Minutes : 
+\series bold
+10
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 2 - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Motor Settings
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Rotation Speed - Percentage : 
+\series bold
+85
+\end_layout
+
+\begin_layout Enumerate
+Rotation Ramping Percentage : 
+\series bold
+85
+\end_layout
+
+\begin_layout Enumerate
+Pump Speed : 
+\series bold
+50
+\end_layout
+
+\begin_layout Enumerate
+Pump ramp : 
+\series bold
+85
+\end_layout
+
+\end_deeper
+\begin_layout Subsubsection*
+6 Hour HPF Dechorionation Cycles
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 1
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Pronase Cycle 1 - Minutes : 
+\series bold
+6
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 1 - Seconds : 
+\series bold
+30
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Rinse Cycle
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Rinse Cycle - Minutes : 
+\series bold
+1
+\end_layout
+
+\begin_layout Enumerate
+Rinse Cycle - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Pronase Cycle 2
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Pronase Cycle 2 - Minutes : 
+\series bold
+10
+\end_layout
+
+\begin_layout Enumerate
+Pronase Cycle 2 - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Motor Settings
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Rotation Speed - Percentage : 
+\series bold
+85
+\end_layout
+
+\begin_layout Enumerate
+Rotation Ramping Percentage : 
+\series bold
+85
+\end_layout
+
+\begin_layout Enumerate
+Pump Speed : 
+\series bold
+50
+\end_layout
+
+\begin_layout Enumerate
+Pump ramp : 
+\series bold
+85
+\end_layout
+
+\end_deeper
+\begin_layout Subsubsection*
+Rinse Cycle
+\end_layout
+
+\begin_layout Enumerate
+Rinse Cycle
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Rinse Cycle - Minutes : 
+\series bold
+1
+\end_layout
+
+\begin_layout Enumerate
+Rinse Cycle - Seconds : 
+\series bold
+0
+\end_layout
+
+\end_deeper
+\begin_layout Enumerate
+Motor Settings
+\end_layout
+
+\begin_deeper
+\begin_layout Enumerate
+Pump Speed : 
+\series bold
+50
+\end_layout
+
+\begin_layout Enumerate
+Pump ramp : 
+\series bold
+85
+\end_layout
+
+\end_deeper
+\end_body
+\end_document

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.0/Dechlorinator.ino

@@ -0,0 +1,134 @@
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Includes, Defines, Instantiations, and Global Variables//////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Includes
+#include "DualVNH5019MotorShield.h"
+#include <SoftwareSerial.h>
+#include <StopWatch.h>
+
+//Pin Definitions (Arduino Suggested Method)
+const unsigned char LcdTX = 5;  //Pin connected to LCD RX Line
+const unsigned char LedGreen = A2;  //Pin connected to rotary encoder led
+const unsigned char LedRed = A3;  //Pin connected to rotary encoder led
+
+
+const unsigned char StartSwitch = 11;  //Pin connected to start switch
+const unsigned char StopSwitch = 13;  //Pin connected to stop switch
+
+const unsigned char EncoderChannelA = A4;  //Pin connected to channel A of the rotary encoder
+const unsigned char EncoderChannelB = A5;  //Pin connected to channel B of the rotary encoder
+
+//Instantiations
+SoftwareSerial LcdSerial(3, LcdTX);  //Software Serial Instantiation with Pin 3 as dummy for RX
+DualVNH5019MotorShield MotorDriver;  //Motor Driver Library Instantiation
+StopWatch MyStopWatch(StopWatch::SECONDS);  //StopWatch Instantiation for measuring time
+
+enum ArduinoStates{  //Enumeration for defining the arduino program states
+  WaitToStart,
+  ChangeConfig,
+  MainProg
+} ArduinoState = WaitToStart;
+
+//Global Variables and Constants
+unsigned char DoneOnce = 0;  //Variable to store whether something has happened or not.
+
+const unsigned int LcdPageDelay = 2;  //Seconds to wait before the lcd changes pages.
+
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Arduino Setup////////////////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+
+void setup(){
+  MotorDriver.init();  //Initialize the VNH5019 Motor Driving Shield
+  InitializePins();  //Initialize pins for switches, rotary encoder, and leds
+  
+  Serial.begin(115200);  //Start communicating to PC at 115200 baud
+  
+  LcdSerial.begin(9600);  //Start communicating with LCD dispaly at 9600 buad
+  FullLcdClear();
+  FullLcdWrite("Tanguay Labs", "Dechlorinator");  //Show the device name
+  Serial.print("Dechlorinator Initialized");
+  delay(5000);  //Wait on name screen for five seconds
+  FullLcdClear();  //Clear the LCD
+}
+
+///////////////////////////////////////////////////////////////////////////////////////////////
+//Main Arduino Program Loop////////////////////////////////////////////////////////////////////
+///////////////////////////////////////////////////////////////////////////////////////////////
+
+void loop(){
+  switch(ArduinoState){
+    case WaitToStart:
+      if(DoneOnce != 1){  //Check to see if the stopwatch needs to be started
+        MyStopWatch.reset();  //Reset the stopwatch
+        MyStopWatch.start();  //Start the stopwatch
+        DoneOnce  = 1;  //Set DoneOnce to 1 so we know it's been started for the first time
+      }
+      
+      if(MyStopWatch.elapsed() < LcdPageDelay){  //Check if the time on the stopwatch is longer than our page delay
+        FullLcdWrite(" Press Start To ","     Begin      ");  //Show the start screen
+      }else{  //If the time is over the page delay, switch to the config info screen
+        FullLcdWrite(" Press Knob To  ","Change Settings ");  //Show the config info screen
+        if(MyStopWatch.elapsed() > (2 * LcdPageDelay)){  //Check to see if the time is longer than two page delays
+          MyStopWatch.reset();  //Reset the stopwatch to 0
+          MyStopWatch.start();  //Start the stopwatch again
+        }  
+      }
+      
+      if(digitalRead(StartSwitch) == 0){  //Check to see if start button has been pressed
+        ArduinoState = MainProg;  //Switch to the main dechlorinator program
+      }
+      
+      if(digitalRead(StartSwitch) == 0){  //Check to see if start button has been pressed
+        ArduinoState = MainProg;  //Switch to the main dechlorinator program
+      }
+      break;
+    default:
+       break;
+  };
+  /*
+  lcdSerial.write(254);
+  lcdSerial.write(128);
+  lcdSerial.write("Press Start");
+  lcdSerial.write(254);
+  lcdSerial.write(192);
+  lcdSerial.print("To Begin");
+  if(digitalRead(11) == 0){
+    for (int i = 0; i <= 400; i++)
+    {
+      md.setM1Speed(i);
+      if (i%200 == 100)
+      {
+        Serial.print("M1 current: ");
+        Serial.println(md.getM1CurrentMilliamps());
+        lcdClear();
+        lcdSerial.write(254);
+        lcdSerial.write(128);
+        lcdSerial.write("Motor 1 Current:");
+        lcdSerial.write(254);
+        lcdSerial.write(192);
+        lcdSerial.print(md.getM1CurrentMilliamps());
+      }
+      delay(5);
+      if(i == 400){
+        while(1){
+          Serial.print("M1 current: ");
+          Serial.println(md.getM1CurrentMilliamps());
+          lcdClear();
+          lcdSerial.write(254);
+          lcdSerial.write(128);
+          lcdSerial.write("Motor 1 Current:");
+          lcdSerial.write(254);
+          lcdSerial.write(192);
+          lcdSerial.print(md.getM1CurrentMilliamps());
+          delay(100);
+          if(digitalRead(3) == 0){
+            i = 0;
+            break;
+          }
+        }
+      }  
+    }
+  }
+  */
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.0/LCD_Functions.ino

@@ -0,0 +1,56 @@
+void LcdMoveToTop(){
+  LcdSerial.write(254);  //Put LCD into move mode
+  LcdSerial.write(128);  //Move to the first character of the first row
+}
+
+void LcdMoveToBottom(){
+  LcdSerial.write(254);  //Put LCD into move mode
+  LcdSerial.write(192);  //Move to the first character of the second row
+}
+
+void FullLcdClear(){
+  LcdSerial.write(254); //Send special command character
+  LcdSerial.write(1);   //Send Clear Screen Command
+}
+
+void TopLcdClear(){
+  LcdMoveToTop();
+  LcdSerial.write("                ");  //Write a blank 16 character string
+}
+
+void BottomLcdClear(){
+  LcdMoveToBottom();
+  LcdSerial.write("                ");  //Write a blank 16 character string
+}
+
+void FullLcdWrite(const char* TopLcd, const char* BottomLcd){
+  TopLcdWrite(TopLcd);
+  BottomLcdWrite(BottomLcd);
+}
+
+void TopLcdWrite(const char *TopLcd){
+  /*
+  unsigned char string[16];
+  Serial.write("Size of string: ");
+  Serial.write(sizeof(TopLcd));
+  delay(5000);
+  for(int i = 0 ; i < sizeof(TopLcd) ; i++){
+      string[i] = TopLcd[i];
+  }
+    
+  if(sizeof(TopLcd) < 16){    
+    for(int i = sizeof(TopLcd) ; i < 16 ; i++){
+      string[i] = 32;
+    }
+  }
+  */
+  LcdMoveToTop();
+  LcdSerial.write(TopLcd);  //Write string
+  
+}
+
+void BottomLcdWrite(const char *BottomLcd){
+  LcdMoveToBottom();
+  LcdSerial.write(BottomLcd);  //Write string
+}
+

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.0/README.txt

@@ -0,0 +1 @@
+I was very new to programming at the time. Also, I had no clue how to spell dechorionator. XD

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.0/Setup_and_Config.ino

@@ -0,0 +1,12 @@
+void InitializePins(){
+  pinMode(LedGreen, OUTPUT); //Set Green LED Pin to Output
+  pinMode(LedRed, OUTPUT); //Set Red LED Pin to Output
+  
+  pinMode(StartSwitch, INPUT); //Set Start Switch Pin to Input
+  pinMode(StopSwitch, INPUT); //Set Stop Switch Pin to Input
+  digitalWrite(StartSwitch, HIGH); //Set the internal pullup resistor for the switch
+  digitalWrite(StopSwitch, HIGH);  //Same for this one
+  
+  pinMode(EncoderChannelA, INPUT); //Set Encoder Channel A Pin to Input
+  pinMode(EncoderChannelB, INPUT); //Set Encoder Channel B Pin to Input
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/DechorionatorV1.1.atsln

@@ -0,0 +1,20 @@
+
+Microsoft Visual Studio Solution File, Format Version 11.00
+# Atmel Studio Solution File, Format Version 11.00
+Project("{E66E83B9-2572-4076-B26E-6BE79FF3018A}") = "DechorionatorV1.1", "DechorionatorV1.1.cppproj", "{C0A89A51-65B6-4173-AE27-4E91C9089ABF}"
+EndProject
+Global
+	GlobalSection(SolutionConfigurationPlatforms) = preSolution
+		Debug|AVR = Debug|AVR
+		Release|AVR = Release|AVR
+	EndGlobalSection
+	GlobalSection(ProjectConfigurationPlatforms) = postSolution
+		{C0A89A51-65B6-4173-AE27-4E91C9089ABF}.Debug|AVR.ActiveCfg = Debug|AVR
+		{C0A89A51-65B6-4173-AE27-4E91C9089ABF}.Debug|AVR.Build.0 = Debug|AVR
+		{C0A89A51-65B6-4173-AE27-4E91C9089ABF}.Release|AVR.ActiveCfg = Release|AVR
+		{C0A89A51-65B6-4173-AE27-4E91C9089ABF}.Release|AVR.Build.0 = Release|AVR
+	EndGlobalSection
+	GlobalSection(SolutionProperties) = preSolution
+		HideSolutionNode = FALSE
+	EndGlobalSection
+EndGlobal

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/DechorionatorV1.1.cpp

@@ -0,0 +1,107 @@
+/*
+ * DechorionatorV1.cpp
+ *
+ * Created: 7/30/2014 4:55:13 PM
+ *  Author: corwin
+ */ 
+#define F_CPU 16000000UL
+
+#include <avr/io.h>
+#include <util/delay.h>
+
+#include "DefineMacrosAndPinDefs.h"
+#include "SoftLCD.h"
+#include "StepperClass.h"
+#include "PumpClass.h"
+#include "EncoderClass.h"
+#include "InterruptServiceRoutines.h"
+
+SoftLCD LCD(&LCD_TX_PORT, &LCD_TX_DDR, P_LCD_TX, &LCD_PWR_PORT, &LCD_PWR_DDR, P_LCD_PWR);
+StepperClass Stepper(&STEPPER_EN_PORT, &STEPPER_EN_DDR, P_STEPPER_EN,
+					 &STEPPER_DIR_PORT, &STEPPER_DIR_DDR, P_STEPPER_DIR,
+					 &STEPPER_STEP_PORT, &STEPPER_STEP_DDR, P_STEPPER_STEP,
+					 &STEPPER_FAULT_PORT, &STEPPER_FAULT_DDR, P_STEPPER_FAULT,
+					 &STEPPER_M0_PORT, &STEPPER_M0_DDR, P_STEPPER_M0,
+					 &STEPPER_M1_PORT, &STEPPER_M1_DDR, P_STEPPER_M1,
+					 &STEPPER_M2_PORT, &STEPPER_M2_DDR, P_STEPPER_M2
+					 );
+					 
+char TopTemp[17];
+char BottomTemp[17];
+
+void TemporaryInit(){
+	//////////Pump Initialization//////////
+	PUMP_PWR_INIT();
+	//////////End Pump Initialization//////////
+		
+	//////////Rotary Encoder Initialization//////////
+	ENCODER_A_INIT();
+	
+	ENCODER_B_INIT();
+	
+	ENCODER_BUTTON_INIT();
+	//////////End Rotary Encoder Initialization//////////
+	
+	
+	//////////Hardware Serial Initialization//////////
+	UART_TX_INIT();
+	UART_RX_INIT();
+	//////////End Hardware Serial Initialization//////////
+	
+	
+	//////////Control Switch Initialization//////////
+	SWITCH_TOP_INIT();
+	SWITCH_BOTTOM_INIT();
+	//////////End Control Switch Initilization//////////
+	
+}
+
+int TimeCount = 0;
+
+int i = 0;
+
+int main(void)
+{
+		TemporaryInit();
+	TCCR2A = 0;
+	TCCR2B = ((1 << CS22) | (1 << CS21) | (1 << CS20));
+	TCNT2 = 0;
+	TIMSK2 = (1 << TOIE0);
+	
+	sei();						//Enable all system interrupts
+	
+	//////////Startup Display and System Initialization//////////
+	LCD.showNameScreen();
+
+	LCD.setTopText("      Time     ");
+	STEPPER_EN_SET();
+    while(1)
+    {
+		for(int i = 2000 ; i > 1200 ; i--){
+			LCD.show();
+			snprintf(BottomTemp, 16, "%d", TimeCount);
+			LCD.setBottomText(BottomTemp);
+			OCR1A = i;
+			_delay_us(2000);
+			if(SWITCH_TOP_GET() || SWITCH_BOTTOM_GET()){
+				STEPPER_EN_SET();
+			}else{
+				STEPPER_EN_CLR();
+			}
+		}
+		for(int i = 1200 ; i < 2000 ; i++){
+			LCD.show();
+			snprintf(BottomTemp, 16, "%d", TimeCount);
+			LCD.setBottomText(BottomTemp);
+			OCR1A = i;
+			_delay_us(2000);
+			if(SWITCH_TOP_GET() || SWITCH_BOTTOM_GET()){
+				STEPPER_EN_SET();
+				}else{
+				STEPPER_EN_CLR();
+			}
+		}
+		
+
+    }
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/DechorionatorV1.1.cppproj

@@ -0,0 +1,162 @@
+<?xml version="1.0" encoding="utf-8"?>
+<Project DefaultTargets="Build" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
+  <PropertyGroup>
+    <SchemaVersion>2.0</SchemaVersion>
+    <ProjectVersion>6.2</ProjectVersion>
+    <ToolchainName>com.Atmel.AVRGCC8.CPP</ToolchainName>
+    <ProjectGuid>{c0a89a51-65b6-4173-ae27-4e91c9089abf}</ProjectGuid>
+    <avrdevice>ATmega328</avrdevice>
+    <avrdeviceseries>none</avrdeviceseries>
+    <OutputType>Executable</OutputType>
+    <Language>CPP</Language>
+    <OutputFileName>$(MSBuildProjectName)</OutputFileName>
+    <OutputFileExtension>.elf</OutputFileExtension>
+    <OutputDirectory>$(MSBuildProjectDirectory)\$(Configuration)</OutputDirectory>
+    <AssemblyName>DechorionatorV1.1</AssemblyName>
+    <Name>DechorionatorV1.1</Name>
+    <RootNamespace>DechorionatorV1.1</RootNamespace>
+    <ToolchainFlavour>Native</ToolchainFlavour>
+    <KeepTimersRunning>true</KeepTimersRunning>
+    <OverrideVtor>false</OverrideVtor>
+    <CacheFlash>true</CacheFlash>
+    <ProgFlashFromRam>true</ProgFlashFromRam>
+    <RamSnippetAddress>0x20000000</RamSnippetAddress>
+    <UncachedRange />
+    <OverrideVtorValue>exception_table</OverrideVtorValue>
+    <BootSegment>2</BootSegment>
+    <eraseonlaunchrule>0</eraseonlaunchrule>
+    <AsfFrameworkConfig>
+      <framework-data xmlns="">
+        <options />
+        <configurations />
+        <files />
+        <documentation help="" />
+        <offline-documentation help="" />
+        <dependencies>
+          <content-extension eid="atmel.asf" uuidref="Atmel.ASF" version="3.18.1" />
+        </dependencies>
+      </framework-data>
+    </AsfFrameworkConfig>
+  </PropertyGroup>
+  <PropertyGroup Condition=" '$(Configuration)' == 'Release' ">
+    <ToolchainSettings>
+      <AvrGccCpp>
+        <avrgcc.common.outputfiles.hex>True</avrgcc.common.outputfiles.hex>
+        <avrgcc.common.outputfiles.lss>True</avrgcc.common.outputfiles.lss>
+        <avrgcc.common.outputfiles.eep>True</avrgcc.common.outputfiles.eep>
+        <avrgcc.common.outputfiles.srec>True</avrgcc.common.outputfiles.srec>
+        <avrgcc.common.outputfiles.usersignatures>False</avrgcc.common.outputfiles.usersignatures>
+        <avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>True</avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>
+        <avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>True</avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>
+        <avrgcc.compiler.symbols.DefSymbols>
+          <ListValues>
+            <Value>NDEBUG</Value>
+          </ListValues>
+        </avrgcc.compiler.symbols.DefSymbols>
+        <avrgcc.compiler.optimization.level>Optimize for size (-Os)</avrgcc.compiler.optimization.level>
+        <avrgcc.compiler.optimization.PackStructureMembers>True</avrgcc.compiler.optimization.PackStructureMembers>
+        <avrgcc.compiler.optimization.AllocateBytesNeededForEnum>True</avrgcc.compiler.optimization.AllocateBytesNeededForEnum>
+        <avrgcc.compiler.warnings.AllWarnings>True</avrgcc.compiler.warnings.AllWarnings>
+        <avrgcccpp.compiler.general.ChangeDefaultCharTypeUnsigned>True</avrgcccpp.compiler.general.ChangeDefaultCharTypeUnsigned>
+        <avrgcccpp.compiler.general.ChangeDefaultBitFieldUnsigned>True</avrgcccpp.compiler.general.ChangeDefaultBitFieldUnsigned>
+        <avrgcccpp.compiler.symbols.DefSymbols>
+          <ListValues>
+            <Value>NDEBUG</Value>
+          </ListValues>
+        </avrgcccpp.compiler.symbols.DefSymbols>
+        <avrgcccpp.compiler.optimization.level>Optimize for size (-Os)</avrgcccpp.compiler.optimization.level>
+        <avrgcccpp.compiler.optimization.PackStructureMembers>True</avrgcccpp.compiler.optimization.PackStructureMembers>
+        <avrgcccpp.compiler.optimization.AllocateBytesNeededForEnum>True</avrgcccpp.compiler.optimization.AllocateBytesNeededForEnum>
+        <avrgcccpp.compiler.warnings.AllWarnings>True</avrgcccpp.compiler.warnings.AllWarnings>
+        <avrgcccpp.linker.libraries.Libraries>
+          <ListValues>
+            <Value>libm</Value>
+          </ListValues>
+        </avrgcccpp.linker.libraries.Libraries>
+      </AvrGccCpp>
+    </ToolchainSettings>
+  </PropertyGroup>
+  <PropertyGroup Condition=" '$(Configuration)' == 'Debug' ">
+    <ToolchainSettings>
+      <AvrGccCpp>
+        <avrgcc.common.outputfiles.hex>True</avrgcc.common.outputfiles.hex>
+        <avrgcc.common.outputfiles.lss>True</avrgcc.common.outputfiles.lss>
+        <avrgcc.common.outputfiles.eep>True</avrgcc.common.outputfiles.eep>
+        <avrgcc.common.outputfiles.srec>True</avrgcc.common.outputfiles.srec>
+        <avrgcc.common.outputfiles.usersignatures>False</avrgcc.common.outputfiles.usersignatures>
+        <avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>True</avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>
+        <avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>True</avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>
+        <avrgcc.compiler.symbols.DefSymbols>
+          <ListValues>
+            <Value>DEBUG</Value>
+          </ListValues>
+        </avrgcc.compiler.symbols.DefSymbols>
+        <avrgcc.compiler.optimization.level>Optimize (-O1)</avrgcc.compiler.optimization.level>
+        <avrgcc.compiler.optimization.PackStructureMembers>True</avrgcc.compiler.optimization.PackStructureMembers>
+        <avrgcc.compiler.optimization.AllocateBytesNeededForEnum>True</avrgcc.compiler.optimization.AllocateBytesNeededForEnum>
+        <avrgcc.compiler.optimization.DebugLevel>Default (-g2)</avrgcc.compiler.optimization.DebugLevel>
+        <avrgcc.compiler.warnings.AllWarnings>True</avrgcc.compiler.warnings.AllWarnings>
+        <avrgcccpp.compiler.general.ChangeDefaultCharTypeUnsigned>True</avrgcccpp.compiler.general.ChangeDefaultCharTypeUnsigned>
+        <avrgcccpp.compiler.general.ChangeDefaultBitFieldUnsigned>True</avrgcccpp.compiler.general.ChangeDefaultBitFieldUnsigned>
+        <avrgcccpp.compiler.symbols.DefSymbols>
+          <ListValues>
+            <Value>DEBUG</Value>
+          </ListValues>
+        </avrgcccpp.compiler.symbols.DefSymbols>
+        <avrgcccpp.compiler.optimization.level>Optimize (-O1)</avrgcccpp.compiler.optimization.level>
+        <avrgcccpp.compiler.optimization.PackStructureMembers>True</avrgcccpp.compiler.optimization.PackStructureMembers>
+        <avrgcccpp.compiler.optimization.AllocateBytesNeededForEnum>True</avrgcccpp.compiler.optimization.AllocateBytesNeededForEnum>
+        <avrgcccpp.compiler.optimization.DebugLevel>Default (-g2)</avrgcccpp.compiler.optimization.DebugLevel>
+        <avrgcccpp.compiler.warnings.AllWarnings>True</avrgcccpp.compiler.warnings.AllWarnings>
+        <avrgcccpp.linker.libraries.Libraries>
+          <ListValues>
+            <Value>libm</Value>
+          </ListValues>
+        </avrgcccpp.linker.libraries.Libraries>
+        <avrgcccpp.assembler.debugging.DebugLevel>Default (-Wa,-g)</avrgcccpp.assembler.debugging.DebugLevel>
+      </AvrGccCpp>
+    </ToolchainSettings>
+  </PropertyGroup>
+  <ItemGroup>
+    <Compile Include="DechorionatorV1.1.cpp">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="DefineMacrosAndPinDefs.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="EncoderClass.cpp">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="EncoderClass.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="InterruptServiceRoutines.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="MegaUART.cpp">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="MegaUART.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="PumpClass.cpp">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="PumpClass.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="SoftLCD.cpp">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="SoftLCD.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="StepperClass.cpp">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="StepperClass.h">
+      <SubType>compile</SubType>
+    </Compile>
+  </ItemGroup>
+  <Import Project="$(AVRSTUDIO_EXE_PATH)\\Vs\\Compiler.targets" />
+</Project>

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/DefineMacrosAndPinDefs.h

@@ -0,0 +1,147 @@
+/*
+ * DefineMacrosAndPinDefs.h
+ *
+ * Created: 7/30/2014 4:56:56 PM
+ *  Author: corwin
+ */ 
+
+
+#ifndef DEFINEMACROSANDPINDEFS_H_
+#define DEFINEMACROSANDPINDEFS_H_
+
+//////////LCD Definitions//////////
+#define P_LCD_TX				PORTB0														//Pin B0 runs tx pin for serial lcd
+#define LCD_TX_PORT				PORTB														//Port that the tx lcd pin is on
+#define LCD_TX_DDR				DDRB														//Direction port that the tx lcd pin is on
+#define LCD_TX_BM				(1 << P_LCD_TX)												//Bit mask for pin
+#define LCD_TX_INIT()			DDRB |= LCD_TX_BM											//Sets tx pin to output
+#define LCD_TX_SET()			PORTB |= LCD_TX_BM											//Macro for setting pin high
+#define LCD_TX_CLR()			PORTB &= ~LCD_TX_BM											//Macro for setting pin low
+
+
+#define P_LCD_PWR				PORTC5														//Pin C5 controls the power to the lcd through a mosfet
+#define LCD_PWR_PORT			PORTC														//Port that the lcd power pin is on
+#define LCD_PWR_DDR				DDRC														//Direction port that the lcd power pin is on
+#define LCD_PWR_BM				(1 << P_LCD_PWR)											//Bit mask for pin
+#define LCD_PWR_INIT()			DDRC |= LCD_PWR_BM											//Sets lcd power control pin to an output
+#define LCD_PWR_SET()			PORTC |= LCD_PWR_BM											//Macro for setting pin high
+#define LCD_PWR_CLR()			PORTC &= ~LCD_PWR_BM										//Macro for setting pin low
+//////////End LCD Definitions
+
+//////////Pump Definitions//////////
+#define P_PUMP_PWR				PORTD5														//Pin D5 controls power to the water pump through a mosfet
+#define PUMP_PWR_BM				(1 << P_PUMP_PWR)											//Bit mask for pin
+#define PUMP_PWR_INIT()			DDRD |= PUMP_PWR_BM											//Sets pump power control pin to an output
+#define PUMP_PWR_SET()			PORTD |= PUMP_PWR_BM										//Macro for setting pin high
+#define PUMP_PWR_CLR()			PORTD &= ~PUMP_PWR_BM										//Macro for setting pin low
+//////////End Pump Definitions//////////
+
+//////////DRV8825 Stepper Motor Driver Definitions//////////
+#define P_STEPPER_DIR			PORTD6														//Pin D6 controls the direction of the stepper motor
+#define STEPPER_DIR_PORT		PORTD
+#define STEPPER_DIR_DDR			DDRD
+#define STEPPER_DIR_BM			(1 << P_STEPPER_DIR)										//Bit mask for pin
+#define STEPPER_DIR_INIT()		DDRD |= STEPPER_DIR_BM										//Sets stepper direction pin to an output
+#define STEPPER_DIR_SET()		PORTD |= STEPPER_DIR_BM										//Macro for setting pin high
+#define STEPPER_DIR_CLR()		PORTD &= ~STEPPER_DIR_BM									//Macro for setting pin low
+
+
+#define P_STEPPER_STEP			PORTD7														//Pin D7 controls the step pin of the driver
+#define STEPPER_STEP_PORT		PORTD
+#define STEPPER_STEP_DDR		DDRD
+#define STEPPER_STEP_BM			(1 << P_STEPPER_STEP)										//Bit mask for pin
+#define STEPPER_STEP_INIT()		DDRD |= STEPPER_STEP_BM										//Sets the step pin to an output
+#define STEPPER_STEP_SET()		PORTD |= STEPPER_STEP_BM									//Macro for setting pin high
+#define STEPPER_STEP_CLR()		PORTD &= ~STEPPER_STEP_BM									//Macro for setting pin low
+
+
+#define P_STEPPER_EN			PORTC1														//Pin C1 controls whether the stepper motor is enabled and running or not
+#define STEPPER_EN_PORT			PORTC
+#define STEPPER_EN_DDR			DDRC
+#define STEPPER_EN_BM			(1 << P_STEPPER_EN)											//Bit mask for pin
+#define STEPPER_EN_INIT()		DDRC |= STEPPER_EN_BM										//Sets stepper enable control pin to an output
+#define STEPPER_EN_SET()		PORTC &= ~STEPPER_EN_BM										//Macro for setting pin high (Note inverted logic!!!)
+#define STEPPER_EN_CLR()		PORTC |= STEPPER_EN_BM										//Macro for setting pin low (Note inverted logic!!!)
+
+
+#define P_STEPPER_FAULT			PORTC0														//Pin C0 senses whether the stepper driver is in a fault state due to over current or over temp conditions
+#define STEPPER_FAULT_PORT		PORTC
+#define STEPPER_FAULT_DDR		DDRC
+#define STEPPER_FAULT_BM		(1 << P_STEPPER_FAULT)										//Bit mask for pin
+#define STEPPER_FAULT_INIT()	DDRC &= ~STEPPER_FAULT_BM									//Sets stepper fault check pin to an input (May need to enable internal pull up?)
+#define STEPPER_FAULT_GET()		!(PINC & STEPPER_FAULT_BM)									//Returns true if in fault state (0 is fault, 1 is non-fault)
+
+
+
+#define P_STEPPER_M0			PORTC2														//Pin C2 sets the lowest bit of the driver micro-stepping
+#define STEPPER_M0_PORT			PORTC
+#define STEPPER_M0_DDR			DDRC
+#define STEPPER_M0_BM			(1 << P_STEPPER_M0)											//Bit mask for pin
+#define STEPPER_M0_INIT()		DDRC |= STEPPER_M0_BM										//Sets the micro-step pin to an output
+#define STEPPER_M0_SET()		PORTC |= STEPPER_M0_BM										//Macro for setting pin high
+#define STEPPER_M0_CLR()		PORTC &= ~STEPPER_M0_BM										//Macro for setting pin low
+
+
+#define P_STEPPER_M1			PORTC3														//Pin C3 sets the middle bit of the driver micro-stepping
+#define STEPPER_M1_PORT			PORTC
+#define STEPPER_M1_DDR			DDRC
+#define STEPPER_M1_BM			(1 << P_STEPPER_M1)											//Bit mask for pin
+#define STEPPER_M1_INIT()		DDRC |= STEPPER_M1_BM										//Sets the micro-step pin to an output
+#define STEPPER_M1_SET()		PORTC |= STEPPER_M1_BM										//Macro for setting pin high
+#define STEPPER_M1_CLR()		PORTC &= ~STEPPER_M1_BM										//Macro for setting pin low
+
+
+#define P_STEPPER_M2			PORTC4														//Pin C4 sets the upper bit of the driver micro-stepping
+#define STEPPER_M2_PORT			PORTC
+#define STEPPER_M2_DDR			DDRC
+#define STEPPER_M2_BM			(1 << P_STEPPER_M2)											//Bit mask for pin
+#define STEPPER_M2_INIT()		DDRC |= STEPPER_M2_BM										//Sets the micro-step pin to an output
+#define STEPPER_M2_SET()		PORTC |= STEPPER_M2_BM										//Macro for setting pin high
+#define STEPPER_M2_CLR()		PORTC &= ~STEPPER_M2_BM										//Macro for setting pin low
+//////////End DRV8825 Stepper Motor Driver Definitions//////////
+
+//////////Rotary Encoder Definitions//////////
+#define P_ENCODER_A				PORTD2														//Pin D2 senses the state for channel A on the rotary encoder
+#define ENCODER_A_BM			(1 << P_ENCODER_A)											//Bit mask for pin
+#define ENCODER_A_INIT()		{DDRD &= ~ENCODER_A_BM; PORTD |= ENCODER_A_BM;}				//Sets channel A pin to an input and enables the internal pull up resistor
+#define ENCODER_A_GET()			!(PIND & ENCODER_A_BM)										//Returns state of the pin (Note inverted logic!!! Makes gray code logic less confusing...)
+
+
+#define P_ENCODER_B				PORTD3														//Pin D3 sense the state for channel B on the rotary encoder
+#define ENCODER_B_BM			(1 << P_ENCODER_B)											//Bit mask for pin
+#define ENCODER_B_INIT()		{DDRD &= ~ENCODER_B_BM; PORTD |= ENCODER_B_BM;}				//Sets channel B pin to an input and enables the internal pull up resistor
+#define ENCODER_B_GET()			!(PIND & ENCODER_B_BM)										//Returns state of the pin (Note inverted logic!!! Makes gray code logic less confusing...)
+
+
+#define P_ENCODER_BUTTON		PORTD4														//Pin D4 senses whether the tactile button on the rotary encoder has been pushed
+#define ENCODER_BUTTON_BM		(1 << P_ENCODER_BUTTON)										//Bit mask for pin
+#define ENCODER_BUTTON_INIT()	{DDRD &= ~ENCODER_BUTTON_BM; PORTD |= ENCODER_BUTTON_BM;}	//Sets encoder button pin to an input and enables the internal pull up resistor
+#define ENCODER_BUTTON_GET()	!(PIND & ENCODER_BUTTON_BM)									//Returns whether the button has been pushed (Note inverted logic!!!)
+//////////End Rotary Encoder Definitions//////////
+
+//////////Hardware Serial Definitions//////////
+#define P_UART_TX				PORTD1														//Pin D1 is the transmit line for the hardware uart
+#define UART_TX_BM				(1 << P_UART_TX)											//Bit mask for pin
+#define UART_TX_INIT()			DDRD |= UART_TX_BM											//Sets the transmit line to an output
+
+
+#define P_UART_RX				PORTD0														//Pin D0 is the receive line for the hardware uart
+#define UART_RX_BM				(1 << P_UART_RX)											//Bit mask for pin
+#define UART_RX_INIT()			DDRD &= ~UART_RX_BM											//Sets the receive line to an input
+//////////End Hardware Serial Definitions//////////
+
+//////////Control Switch Definitions//////////
+#define P_SWITCH_TOP			PORTB2														//Pin B1 senses whether the top button on the control switch has been pushed (RINSE)
+#define SWITCH_TOP_BM			(1 << P_SWITCH_TOP)											//Bit mask for pin
+#define SWITCH_TOP_INIT()		{DDRB |= SWITCH_TOP_BM; PORTB |= SWITCH_TOP_BM;}			//Sets the button to an input and enables the internal pull up resistor
+#define SWITCH_TOP_GET()		!(PINB & SWITCH_TOP_BM)									//Returns whether the button has been pushed (Note inverted logic!!!)
+
+
+#define P_SWITCH_BOTTOM			PORTB1														//Pin B2 senses whether the bottom button on the control switch has been pushed (ESTOP)
+#define SWITCH_BOTTOM_BM		(1 << P_SWITCH_BOTTOM)										//Bit mask for pin
+#define SWITCH_BOTTOM_INIT()	{DDRB |= SWITCH_BOTTOM_BM; PORTB |= SWITCH_BOTTOM_BM;}		//Sets the button to an input and enables the internal pull up resistor
+#define SWITCH_BOTTOM_GET()		!(PINB & SWITCH_BOTTOM_BM)									//Returns whether the button has been pushed (Note inverted logic!!!)
+//////////Control Switch Definitions//////////
+
+
+#endif /* DEFINEMACROSANDPINDEFS_H_ */

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/EncoderClass.cpp

@@ -0,0 +1,19 @@
+/* 
+* EncoderClass.cpp
+*
+* Created: 8/6/2014 9:20:23 AM
+* Author: corwin
+*/
+
+
+#include "EncoderClass.h"
+
+// default constructor
+EncoderClass::EncoderClass()
+{
+} //EncoderClass
+
+// default destructor
+EncoderClass::~EncoderClass()
+{
+} //~EncoderClass

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/EncoderClass.h

@@ -0,0 +1,31 @@
+/* 
+* EncoderClass.h
+*
+* Created: 8/6/2014 9:20:23 AM
+* Author: corwin
+*/
+
+
+#ifndef __ENCODERCLASS_H__
+#define __ENCODERCLASS_H__
+
+
+class EncoderClass
+{
+//variables
+public:
+protected:
+private:
+
+//functions
+public:
+	EncoderClass();
+	~EncoderClass();
+protected:
+private:
+	EncoderClass( const EncoderClass &c );
+	EncoderClass& operator=( const EncoderClass &c );
+
+}; //EncoderClass
+
+#endif //__ENCODERCLASS_H__

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/InterruptServiceRoutines.h

@@ -0,0 +1,46 @@
+/*
+ * InterruptServiceRoutines.h
+ *
+ * Created: 8/4/2014 4:55:26 PM
+ *  Author: corwin
+ */ 
+
+
+#ifndef INTERRUPTSERVICEROUTINES_H_
+#define INTERRUPTSERVICEROUTINES_H_
+
+extern SoftLCD LCD;
+extern StepperClass Stepper;
+extern int i;
+extern int TimeCount;
+
+ISR(TIMER2_OVF_vect){
+	static int CountDelay = 0;
+	CountDelay++;
+	if(CountDelay >= 61){
+		TimeCount++;
+		CountDelay = 0;
+	}
+}
+
+ISR(TIMER1_COMPA_vect){
+	Stepper.OneStep();
+	i++;
+}
+
+
+////////Pin change interrupt 2 is for pins pcint 23 to 16
+////////
+//Pin change interrupt 18 is on pin PORTD2
+//ISR(){
+	
+//}
+
+//Pin change interrupt 19 is on pin PORTD3
+//ISR(){
+	
+//}
+
+
+
+#endif /* INTERRUPTSERVICEROUTINES_H_ */

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/MegaUART.cpp

@@ -0,0 +1,19 @@
+/* 
+* MegaUART.cpp
+*
+* Created: 7/31/2014 12:00:58 PM
+* Author: corwin
+*/
+
+
+#include "MegaUART.h"
+
+// default constructor
+MegaUART::MegaUART()
+{
+} //MegaUART
+
+// default destructor
+MegaUART::~MegaUART()
+{
+} //~MegaUART

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/MegaUART.h

@@ -0,0 +1,31 @@
+/* 
+* MegaUART.h
+*
+* Created: 7/31/2014 12:00:58 PM
+* Author: corwin
+*/
+
+
+#ifndef __MEGAUART_H__
+#define __MEGAUART_H__
+
+
+class MegaUART
+{
+//variables
+public:
+protected:
+private:
+
+//functions
+public:
+	MegaUART();
+	~MegaUART();
+protected:
+private:
+	MegaUART( const MegaUART &c );
+	MegaUART& operator=( const MegaUART &c );
+
+}; //MegaUART
+
+#endif //__MEGAUART_H__

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/PumpClass.cpp

@@ -0,0 +1,19 @@
+/* 
+* PumpClass.cpp
+*
+* Created: 8/6/2014 9:16:05 AM
+* Author: corwin
+*/
+
+
+#include "PumpClass.h"
+
+// default constructor
+PumpClass::PumpClass()
+{
+} //PumpClass
+
+// default destructor
+PumpClass::~PumpClass()
+{
+} //~PumpClass

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/PumpClass.h

@@ -0,0 +1,31 @@
+/* 
+* PumpClass.h
+*
+* Created: 8/6/2014 9:16:05 AM
+* Author: corwin
+*/
+
+
+#ifndef __PUMPCLASS_H__
+#define __PUMPCLASS_H__
+
+
+class PumpClass
+{
+//variables
+public:
+protected:
+private:
+
+//functions
+public:
+	PumpClass();
+	~PumpClass();
+protected:
+private:
+	PumpClass( const PumpClass &c );
+	PumpClass& operator=( const PumpClass &c );
+
+}; //PumpClass
+
+#endif //__PUMPCLASS_H__

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/SoftLCD.cpp

@@ -0,0 +1,164 @@
+/* 
+* SoftLCD.cpp
+*
+* Created: 7/31/2014 11:20:02 AM
+* Author: corwin
+*/
+
+
+#include "SoftLCD.h"
+
+// default constructor
+SoftLCD::SoftLCD(volatile uint8_t *txport, volatile uint8_t *txddr, int txpin, volatile uint8_t *pwrport, volatile uint8_t *pwrddr, int pwrpin)
+{
+	//Set up public variables
+	//strncpy(TopLine, "Test", 16);
+	snprintf(TopLine, 16, "                ");
+	snprintf(BottomLine, 16,  "                ");
+	
+	strcpy(TopLinePrev, TopLine);
+	strcpy(BottomLinePrev, BottomLine);
+	
+	//Set up private variables
+	serPort = txport;
+	serDDR = txddr;
+	serPin = txpin;
+	
+	pwrPort = pwrport;
+	pwrDDR = pwrddr;
+	pwrPin = pwrpin;
+	
+	//Set up tx pin for transmission
+	*serDDR |= (1 << serPin);
+	*serPort |= (1 << serPin);
+	
+	//Set up power control pin for output
+	*pwrDDR |= (1 << pwrPin);
+	setLCDOn(true);	//On by default
+	putChar(124);
+	putChar(157);
+	
+	setRefreshRate(5);	//Keep at 10fps or lower to keep screen looking nice. 5 fps seems like a good middle ground
+
+	
+} //SoftLCD
+
+// default destructor
+SoftLCD::~SoftLCD()
+{
+} //~SoftLCD
+
+void SoftLCD::putChar(char c) {
+	//TCCR1B &= ~((1 << CS10) | (1 << CS11) | (1 << CS12));
+	//Start bit
+	*serPort &= ~(1 << serPin);									//Write a zero for the start bit
+	_delay_us(MICROSECONDS_PER_BIT);							//Wait one bit period
+
+	//Begin data bits
+	for (uint8_t bit_mask = 0x01; bit_mask ; bit_mask <<= 1) {	//Move through each bit in the char starting with the least significant bit
+		if (c & bit_mask) {										//If that position contains a 1
+			*serPort |= (1 << serPin);							//Write a 1 to the tx pin
+		}else {													//Otherwise...
+			*serPort &= ~(1 << serPin);							//Write a 0 to the tx pin
+		}
+		_delay_us(MICROSECONDS_PER_BIT);						//Delay for the correct period of time for one bit
+	}													
+
+	//Stop bit(s)
+	*serPort |= (1<<serPin);									//Write a one for the stop bit
+	_delay_us(MICROSECONDS_PER_BIT * STOP_BITS);				//Wait the period of time required for the number of stop bits desired
+	//TCCR1B |= ((1 << CS10) | (1 << CS11));
+}
+
+
+void SoftLCD::setLCDOn(bool on)
+{
+	if(on == true){
+		*pwrPort |= (1 << pwrPin);
+	}else if(on == false){
+		*pwrPort &= ~(1 << pwrPin);
+	}
+}
+
+void SoftLCD::setRefreshRate(int rate)
+{/*
+	TCCR0A = 0;
+	TCCR0B = ((1 << CS10) | (1 << CS12));
+	TCNT0 = 0;
+	TIMSK0 = (1 << TOIE0);
+*/
+}
+
+void SoftLCD::show()
+{
+	if(strcmp(TopLine, TopLinePrev) != 0){
+		_moveToTop();
+		_printLine((char *)"                ");
+		_moveToTop();
+		_printLine(TopLine);
+		strcpy(TopLinePrev, TopLine);
+	}
+	
+	if(strcmp(BottomLine, BottomLinePrev) != 0){
+		_moveToBottom();
+		_printLine((char *)"                ");
+		_moveToBottom();
+		_printLine(BottomLine);
+		strcpy(BottomLinePrev, BottomLine);
+	}
+	
+}
+
+void SoftLCD::_moveToTop()
+{
+	putChar(254);	//Puts lcd into command mode
+	putChar(128);	//Moves to first character on top
+}
+
+void SoftLCD::_moveToBottom()
+{
+	putChar(254);	//Puts lcd into command mode
+	putChar(192);	//Moves to first character on bottom
+}
+
+void SoftLCD::_printLine(char *text)
+{
+	for(int i = 0 ; ((i < 16) && (text[i] != '\0')) ; i++){
+		putChar(text[i]);
+	}
+}
+
+void SoftLCD::setTopText(char *top)
+{
+	snprintf(TopLine, 16, top);
+}
+
+void SoftLCD::setTopText(const char *top)
+{
+	snprintf(TopLine, 16, top);
+}
+
+void SoftLCD::setBottomText(char *bottom)
+{
+	snprintf(BottomLine, 16, bottom);
+}
+
+void SoftLCD::setBottomText(const char *bottom)
+{
+	snprintf(BottomLine, 16, bottom);
+}
+
+void SoftLCD::showNameScreen()
+{
+	_delay_ms(2000);						//Delay for LCD
+	setTopText(" Dechorionator");		//Startup Text Top
+	setBottomText(" Revision 2.0");		//Startup Text Bottom
+	show();
+	_delay_ms(2750);						//Pause for effect
+}
+
+void SoftLCD::disableSparkfunLogo()
+{
+	putChar(124);
+	putChar(9);
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/SoftLCD.h

@@ -0,0 +1,79 @@
+/* 
+* SoftLCD.h
+*
+* Created: 7/31/2014 11:20:02 AM
+* Author: corwin
+*/
+
+
+#ifndef __SOFTLCD_H__
+#define __SOFTLCD_H__
+#define F_CPU 16000000UL
+
+#include <avr/io.h>
+#include <inttypes.h>
+#include <avr/interrupt.h>
+#include <util/delay.h>
+#include <stdio.h>
+#include <string.h>
+
+#include "DefineMacrosAndPinDefs.h"
+
+#define REFRESH_RATE_CONSTANT (16000000ul/1024)
+
+#define BAUD 9600
+#define STOP_BITS 1
+
+#define MICROSECONDS_OVERHEAD_ADJUST 0
+#define MICROSECONDS_PER_BIT ((1000000ul / BAUD) - MICROSECONDS_OVERHEAD_ADJUST)
+
+class SoftLCD
+{
+//variables
+public:
+protected:
+private:
+	FILE static usartout;
+
+	volatile uint8_t *serPort;
+	volatile uint8_t *serDDR;
+	int serPin;
+	
+	volatile uint8_t *pwrPort;
+	volatile uint8_t *pwrDDR;
+	int pwrPin;
+	
+	char TopLine[17];
+	char BottomLine[17];
+	
+	char TopLinePrev[17];
+	char BottomLinePrev[17];
+//functions
+public:
+	SoftLCD(volatile uint8_t *txport, volatile uint8_t *txddr, int txpin, volatile uint8_t *pwrport, volatile uint8_t *pwrddr, int pwrpin);
+	
+	void disableSparkfunLogo();
+	void showNameScreen();
+	
+	void putChar(char c);
+	void setLCDOn(bool on);
+	void setRefreshRate(int rate);
+	void show();
+	
+	void setTopText(char *top);
+	void setBottomText(char *bottom);
+	void setTopText(const char *top);
+	void setBottomText(const char *bottom);
+	
+	~SoftLCD();
+protected:
+private:
+	SoftLCD(const SoftLCD & c);
+	SoftLCD& operator=( const SoftLCD &c );
+	void _printLine(char *text);
+	void _moveToTop();
+	void _moveToBottom();
+
+}; //SoftLCD
+
+#endif //__SOFTLCD_H__

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/StepperClass.cpp

@@ -0,0 +1,119 @@
+/* 
+* StepperClass.cpp
+*
+* Created: 8/1/2014 5:13:57 PM
+* Author: corwin
+*/
+
+
+#include "StepperClass.h"
+
+// default constructor
+StepperClass::StepperClass(volatile uint8_t *enport, volatile uint8_t *enddr, int enpin,
+						   volatile uint8_t *dirport, volatile uint8_t *dirddr, int dirpin,
+						   volatile uint8_t *stepport, volatile uint8_t *stepddr, int steppin,
+						   volatile uint8_t *faultport, volatile uint8_t *faultddr, int faultpin,
+						   volatile uint8_t *m0port, volatile uint8_t *m0ddr, int m0pin,
+						   volatile uint8_t *m1port, volatile uint8_t *m1ddr, int m1pin,
+						   volatile uint8_t *m2port, volatile uint8_t *m2ddr, int m2pin
+						   )
+{
+	enPort = enport;
+	enDDR = enddr;
+	enPin = enpin;
+	_setupPinAsOutput(enDDR, enPin);
+	_disableStepper();
+	
+	dirPort = dirport;
+	dirDDR = dirddr;
+	dirPin = dirpin;
+	_setupPinAsOutput(enDDR, enPin);
+	_setPinLow(dirPort, dirPin);
+	
+	stepPort = stepport;
+	stepDDR = stepddr;
+	stepPin = steppin;
+	_setupPinAsOutput(enDDR, enPin);
+	_setPinLow(stepPort, stepPin);
+	
+	faultPort = faultport;
+	faultDDR = faultddr;
+	faultPin = faultpin;
+	_setupPinAsInput(faultPort, faultDDR, faultPin, false);
+	
+	m0Port = m0port;
+	m0DDR = m0ddr;
+	m0Pin = m0pin;
+	_setupPinAsOutput(enDDR, enPin);
+	_setPinHigh(m0Port, m0Pin);
+	
+	m1Port = m1port;
+	m1DDR = m1ddr;
+	m1Pin = m1pin;
+	_setupPinAsOutput(enDDR, enPin);
+	_setPinLow(m1Port, m1Pin);
+	
+	m2Port = m2port;
+	m2DDR = m2ddr;
+	m2Pin = m2pin;
+	_setupPinAsOutput(enDDR, enPin);
+	_setPinLow(m2Port, m2Pin);
+	
+	
+	TCCR1A = 0;												//Set output compare mode for channel A and B to normal operation and waveform generation to normal
+	TCCR1B = ((1 << WGM12) | (1 << CS10) | (1 << CS11));	//Set clk prescalar for timer to clk/1024 and enable clear on timer compare match
+	TCNT1 = 0;												//Zero the count register
+	TIMSK1 = (1 << OCIE1A);									//Set interrupt flag to trigger on counter 1 overflow
+	OCR1A = 2000;				//Set the count value based on what's needed to update at a specific number of fps	
+	
+} //StepperClass
+
+// default destructor
+StepperClass::~StepperClass()
+{
+} //~StepperClass
+
+void StepperClass::_setupPinAsOutput(volatile uint8_t *ddr, int pin)
+{
+	*ddr |= (1 << pin);
+}
+
+void StepperClass::_setupPinAsInput(volatile uint8_t *port, volatile uint8_t *ddr, int pin, bool enablePullup = false)
+{
+	*ddr &= ~(1 << pin);
+	if(enablePullup){
+		*port |= (1 << pin);
+	}
+}
+
+void StepperClass::_enableStepper()
+{
+	*enPort &= ~(1 << enPin);
+}
+
+void StepperClass::_disableStepper()
+{
+	*enPort |= (1 << enPin);
+}
+
+void StepperClass::_setPinLow(volatile uint8_t *port, int pin)
+{
+	*port &= ~(1 << pin);
+}
+
+void StepperClass::_setPinHigh(volatile uint8_t *port, int pin)
+{
+	*port |= (1 << pin);
+}
+
+void StepperClass::OneStep()
+{
+	_setPinHigh(stepPort, stepPin);
+	_delay_us(2);
+	_setPinLow(stepPort, stepPin);
+}
+
+void StepperClass::SetRPM(int rpm)
+{
+	OCR1B = 35000;//(long(STEPPER_RPM_CONSTANT)/rpm);				//Set the count value based on what's needed to update at a specific number of fps
+}

OSU SARL/Control Board Firmware/Dechorionator/Driver Board Revision 1.1/StepperClass.h

@@ -0,0 +1,91 @@
+/* 
+* StepperClass.h
+*
+* Created: 8/1/2014 5:13:57 PM
+* Author: corwin
+*
+*	MSTEP	M2	M1	M0	DEC
+*	1		0	0	0	0
+*	2		0	0	1	1
+*	4		0	1	0	2
+*	8		0	1	1	3
+*	16		1	0	0	4
+*	32		1	0	1	5
+*
+*/
+
+
+#ifndef __STEPPERCLASS_H__
+#define __STEPPERCLASS_H__
+#define F_CPU 16000000UL
+
+#include <util/delay.h>
+#include <avr/io.h>
+#include <inttypes.h>
+
+#define STEPPER_RPM_CONSTANT (16000000ul/1024)*60)
+
+class StepperClass
+{
+//variables
+public:
+protected:
+private:
+	volatile uint8_t *enPort;
+	volatile uint8_t *enDDR;
+	int enPin;
+	
+	volatile uint8_t *dirPort;
+	volatile uint8_t *dirDDR;
+	int dirPin;
+	
+	volatile uint8_t *stepPort;
+	volatile uint8_t *stepDDR;
+	int stepPin;
+	
+	volatile uint8_t *faultPort;
+	volatile uint8_t *faultDDR;
+	int faultPin;
+	
+	volatile uint8_t *m0Port;
+	volatile uint8_t *m0DDR;
+	int m0Pin;
+	
+	volatile uint8_t *m1Port;
+	volatile uint8_t *m1DDR;
+	int m1Pin;
+	
+	volatile uint8_t *m2Port;
+	volatile uint8_t *m2DDR;
+	int m2Pin;
+
+//functions
+public:
+	StepperClass(volatile uint8_t *enport, volatile uint8_t *enddr, int enpin,
+				 volatile uint8_t *dirport, volatile uint8_t *dirddr, int dirpin,
+				 volatile uint8_t *stepport, volatile uint8_t *stepddr, int steppin,
+				 volatile uint8_t *faultport, volatile uint8_t *faultddr, int faultpin,
+				 volatile uint8_t *m0port, volatile uint8_t *m0ddr, int m0pin,
+				 volatile uint8_t *m1port, volatile uint8_t *m1ddr, int m1pin,
+				 volatile uint8_t *m2port, volatile uint8_t *m2ddr, int m2pin
+				 );
+	void SetRPM(int rpm); 
+	void OneStep();
+				 
+	~StepperClass();
+protected:
+private:
+	StepperClass( const StepperClass &c );
+	StepperClass& operator=( const StepperClass &c );
+	void _setupPinAsOutput(volatile uint8_t *ddr, int pin);
+	void _setupPinAsInput(volatile uint8_t *port, volatile uint8_t *ddr, int pin, bool enablePullup);
+
+	void _enableStepper();
+	void _disableStepper();
+	
+	void _setPinLow(volatile uint8_t *port, int pin);
+	void _setPinHigh(volatile uint8_t *port, int pin);
+
+}; //StepperClass
+
+#endif //__STEPPERCLASS_H__

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 1.1/AxisClass.cpp

@@ -0,0 +1,91 @@
+#include "AxisClass.h"
+#include <Arduino.h>
+extern const unsigned char Microstep[6][3];
+
+Axis::Axis (unsigned char AxisStep, unsigned char AxisDir, unsigned char AxisM0, unsigned char AxisM1, unsigned char AxisM2, unsigned char AxisFault){
+  p_Step = AxisStep;
+  p_Dir = AxisDir;
+  p_M0 = AxisM0;
+  p_M1 = AxisM1;
+  p_M2 = AxisM2;
+  p_Fault = AxisFault;
+  DelVal = 8;
+
+  pinMode(p_Step, OUTPUT);
+  pinMode(p_Dir, OUTPUT);
+  pinMode(p_M0, OUTPUT);
+  pinMode(p_M1, OUTPUT);
+  pinMode(p_M2, OUTPUT);
+  pinMode(p_Fault, INPUT);
+
+  SetMicrostep(8); 
+}
+
+
+void Axis::SetMicrostep(unsigned char Level){
+  unsigned char row = -1;
+  switch (Level){
+  case 1:
+    row = 0;
+    break;
+  case 2:
+    row = 1;
+    break;
+  case 4:
+    row = 2;
+    break;
+  case 8:
+    row = 3;
+    break;
+  case 16:
+    row = 4;
+    break;
+  case 32:
+    row = 5;
+    break;
+  }
+
+  digitalWrite(p_M0, Microstep[row][0]);
+  digitalWrite(p_M1, Microstep[row][1]);
+  digitalWrite(p_M2, Microstep[row][2]);
+
+
+}
+
+void Axis::StepForward(){
+  digitalWrite(p_Dir, HIGH);
+  digitalWrite(p_Step, HIGH);
+  digitalWrite(p_Step, LOW);
+}
+
+void Axis::StepBackward(){
+  digitalWrite(p_Dir, LOW);
+  digitalWrite(p_Step, HIGH);
+  digitalWrite(p_Step, LOW);  
+}
+
+int Axis::SetRPM(int RPM){
+  int CountVal = ((16000000L/8)/((200L*8*RPM)/60));
+  cli();
+  OCR1A = CountVal;
+  sei();
+  return CountVal;
+
+}
+
+void Axis::SetDelay(unsigned int delLen){
+  DelVal = delLen;
+}
+
+
+
+
+
+
+
+
+
+
+
+
+

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 1.1/AxisClass.h

@@ -0,0 +1,49 @@
+#ifndef AXIS_CLASS_H
+#define AXIS_CLASS_H
+const unsigned char Microstep[6][3] = {
+  {
+    0, 0, 0
+  }
+  ,
+  {
+    1, 0, 0
+  }
+  ,
+  {
+    0, 1, 0
+  }
+  ,
+  {
+    1, 1, 0
+  }
+  ,
+  {
+    0, 0, 1
+  }
+  ,
+  {
+    1, 0, 1
+  }
+};
+
+class Axis {
+private:
+  unsigned char p_Step;
+  unsigned char p_Dir;
+  unsigned char p_M0;
+  unsigned char p_M1;
+  unsigned char p_M2;
+  unsigned char p_Fault;
+
+  unsigned int DelVal;
+
+public:
+  Axis (unsigned char AxisStep, unsigned char AxisDir, unsigned char AxisM0, unsigned char AxisM1, unsigned char AxisM2, unsigned char AxisFault);
+  void SetMicrostep(unsigned char Level);
+  void StepForward();
+  void StepBackward();
+  int SetRPM(int RPM);
+  void SetDelay(unsigned int delLen);
+};
+#endif
+

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 1.1/DriverBoardClass.cpp

@@ -0,0 +1,73 @@
+#include "DriverBoardClass.h"
+#include <Arduino.h>
+
+DriverBoard::DriverBoard(Axis *XAxisPt,Axis *YAxisPt, Axis *ZAxisPt, unsigned char ServoP, unsigned char StatusLed, unsigned char ErrorLed, unsigned char M_Enable, unsigned char ESTOP, unsigned char LimitESTOP, unsigned char X1_Lim, unsigned char X2_Lim, unsigned char Y1_Lim, 
+                         unsigned char Y2_Lim, unsigned char Z1_Lim, unsigned char Z2_Lim, unsigned char A1_Lim, unsigned char A2_Lim, unsigned char XJL, unsigned char XJR, unsigned char YJF, unsigned char YJB, unsigned char ZJU, 
+                         unsigned char ZJD, unsigned char AJF, unsigned char AJB, unsigned char JSI, unsigned char JSD){
+  //Assign Pins to Class Variables
+  XAxis = XAxisPt;
+  YAxis = YAxisPt;
+  ZAxis = ZAxisPt;
+  p_Servo = ServoP;
+  p_StatusLed = StatusLed;
+  p_ErrorLed = ErrorLed;
+  p_M_Enable = M_Enable;
+  p_ESTOP = ESTOP;
+  p_LimitESTOP = LimitESTOP;
+  p_X1_Lim = X1_Lim;
+  p_X2_Lim = X2_Lim;
+  p_Y1_Lim = Y1_Lim;
+  p_Y2_Lim = Y2_Lim;
+  p_Z1_Lim = Z1_Lim;
+  p_Z2_Lim = Z2_Lim;
+  p_A1_Lim = A1_Lim;
+  p_A2_Lim = A2_Lim;
+  p_XJL = XJL;
+  p_XJR = XJR;
+  p_YJF = YJF;
+  p_YJB = YJB;
+  p_ZJU = ZJU;
+  p_ZJD = ZJD;
+  p_AJF = AJF;
+  p_AJB = AJB;
+  p_JSI = JSI;
+  p_JSD = JSD;
+  
+  //Set pin modes for output pins
+  pinMode(p_Servo, OUTPUT);
+  pinMode(p_StatusLed, OUTPUT);
+  pinMode(p_ErrorLed, OUTPUT);
+  pinMode(p_M_Enable, OUTPUT);
+  
+  //Set pin modes for input pins
+  pinMode(p_ESTOP, INPUT);
+  pinMode(p_LimitESTOP, INPUT);
+  pinMode(p_X1_Lim, INPUT);
+  pinMode(p_X2_Lim, INPUT);
+  pinMode(p_Y1_Lim, INPUT);
+  pinMode(p_Y2_Lim, INPUT);
+  pinMode(p_Z1_Lim, INPUT);
+  pinMode(p_Z2_Lim, INPUT);
+  pinMode(p_A1_Lim, INPUT);
+  pinMode(p_A2_Lim, INPUT);
+  pinMode(p_XJL, INPUT);
+  pinMode(p_XJR, INPUT);
+  pinMode(p_YJF, INPUT);
+  pinMode(p_YJB, INPUT);
+  pinMode(p_ZJU, INPUT);
+  pinMode(p_ZJD, INPUT);
+  pinMode(p_AJF, INPUT);
+  pinMode(p_AJB, INPUT);
+  pinMode(p_JSI, INPUT);
+  pinMode(p_JSD, INPUT);  
+  
+  digitalWrite(p_M_Enable, LOW); //Enable motor drivers
+  
+};
+
+void DriverBoard::MoveToPosition(long XPos){
+  XAxis->StepForward();
+  YAxis->StepForward();
+  ZAxis->StepForward();
+}
+

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 1.1/DriverBoardClass.h

@@ -0,0 +1,53 @@
+#ifndef DRIVERBOARD_CLASS_H
+#define DRIVERBOARD_CLASS_H
+
+#include "AxisClass.h"
+
+//extern Axis XAxis;
+///extern Axis YAxis;
+//extern Axis ZAxis;
+  
+class DriverBoard{
+private:
+  float CurXPos;
+  float CurYPos;
+  float CurZPos;
+  
+  unsigned char p_Servo;
+  unsigned char p_StatusLed;
+  unsigned char p_ErrorLed;
+  unsigned char p_M_Enable;
+  unsigned char p_ESTOP;
+  unsigned char p_LimitESTOP;
+  unsigned char p_X1_Lim;
+  unsigned char p_X2_Lim;
+  unsigned char p_Y1_Lim;
+  unsigned char p_Y2_Lim;
+  unsigned char p_Z1_Lim;
+  unsigned char p_Z2_Lim;
+  unsigned char p_A1_Lim;
+  unsigned char p_A2_Lim;
+  unsigned char p_XJL;
+  unsigned char p_XJR;
+  unsigned char p_YJF;
+  unsigned char p_YJB;
+  unsigned char p_ZJU;
+  unsigned char p_ZJD;
+  unsigned char p_AJF;
+  unsigned char p_AJB;
+  unsigned char p_JSI;
+  unsigned char p_JSD;
+  
+  Axis *XAxis;
+  Axis *YAxis;
+  Axis *ZAxis;
+  
+public:
+  DriverBoard(Axis *XAxisPt, Axis *YAxisPt, Axis *ZAxisPt, unsigned char ServoP, unsigned char StatusLed, unsigned char ErrorLed, unsigned char M_Enable, unsigned char ESTOP, unsigned char LimitESTOP, unsigned char X1_Lim, unsigned char X2_Lim, unsigned char Y1_Lim, 
+              unsigned char Y2_Lim, unsigned char Z1_Lim, unsigned char Z2_Lim, unsigned char A1_Lim, unsigned char A2_Lim, unsigned char XJL, unsigned char XJR, unsigned char YJF, unsigned char YJB, unsigned char ZJU, 
+              unsigned char ZJD, unsigned char AJF, unsigned char AJB, unsigned char JSI, unsigned char JSD);
+              
+  void MoveToPosition(long XPos);
+};
+
+#endif

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 1.1/PickAndPlaceDriverBoardRev1_1.ino

@@ -0,0 +1,159 @@
+#include <SoftwareSerial.h>
+#include "DriverBoardClass.h"
+
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+//Pin Definitions
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+//Inputs/////////////////////////////////////////
+////////////////////////////////////////////////
+const unsigned char p_ESTOP = 2;
+const unsigned char p_LimitESTOP = 3;
+
+const unsigned char p_XFault = 27;
+const unsigned char p_YFault = 33;
+const unsigned char p_AFault = 41;
+const unsigned char p_SFault = A13;
+
+const unsigned char p_X1_Lim = A0;
+const unsigned char p_X2_Lim = A1;
+const unsigned char p_Y1_Lim = A2;
+const unsigned char p_Y2_Lim = A3;
+const unsigned char p_Z1_Lim = A4;
+const unsigned char p_Z2_Lim = A5;
+const unsigned char p_A1_Lim = A6;
+const unsigned char p_A2_Lim = A7;
+
+const unsigned char p_XJL = 42;
+const unsigned char p_XJR = 43;
+const unsigned char p_YJF = 44;
+const unsigned char p_YJB = 45;
+const unsigned char p_ZJU = 46;
+const unsigned char p_ZJD = 47;
+const unsigned char p_AJF = 48;
+const unsigned char p_AJB = 49;
+const unsigned char p_JSI = A14;
+const unsigned char p_JSD = A15;
+
+/////////////////////////////////////////////////
+//Outputs////////////////////////////////////////
+////////////////////////////////////////////////
+const unsigned char p_M_Enable = 13;
+
+const unsigned char p_StatusLed = 8;
+const unsigned char p_ErrorLed = 9;
+
+const unsigned char p_XStep = 22;
+const unsigned char p_XDir = 23;
+const unsigned char p_XM0 = 24;
+const unsigned char p_XM1 = 25;
+const unsigned char p_XM2 = 26;
+
+const unsigned char p_YStep = 28;
+const unsigned char p_YDir = 29;
+const unsigned char p_YM0 = 30;
+const unsigned char p_YM1 = 31;
+const unsigned char p_YM2 = 32;
+
+const unsigned char p_AStep = 34;
+const unsigned char p_ADir = 35;
+const unsigned char p_AM0 = 36;
+const unsigned char p_AM1 = 37;
+const unsigned char p_AM2 = 40;
+
+const unsigned char p_SStep = A8;
+const unsigned char p_SDir = A9;
+const unsigned char p_SM0 = A10;
+const unsigned char p_SM1 = A11;
+const unsigned char p_SM2 = A12;
+
+const unsigned char p_Servo = 5;
+
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+//Global Variables and Instantiations
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+Axis XAxis(p_XStep, p_XDir, p_XM0, p_XM1, p_XM2, p_XFault);
+Axis YAxis(p_YStep, p_YDir, p_YM0, p_YM1, p_YM2, p_YFault);
+Axis ZAxis(p_AStep, p_ADir, p_AM0, p_AM1, p_AM2, p_AFault);
+DriverBoard myDriver(&XAxis, &YAxis, &ZAxis, p_Servo, p_StatusLed, p_ErrorLed, p_M_Enable, p_ESTOP, p_LimitESTOP, p_X1_Lim, p_X2_Lim, p_Y1_Lim, p_Y2_Lim,
+p_Z1_Lim, p_Z2_Lim, p_A1_Lim, p_A2_Lim, p_XJL, p_XJR, p_YJF, p_YJB, p_ZJU, p_ZJD, p_AJF, p_AJB, p_JSI, p_JSD);
+
+
+SoftwareSerial MySerial(10, 12);
+
+String ReceiveBuffer = "";
+
+
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+//Interrupt Service Routines
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+ISR(TIMER1_COMPA_vect){
+ myDriver.MoveToPosition(1);
+
+}
+
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+//Arduino Setup Function
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+void setup(){
+ // cli();
+  Serial.begin(4800);
+  MySerial.begin(4800);
+
+TCCR1A = 0;
+  TCCR1B = 0;
+  TCNT1 = 0;
+
+  PRR1 &= ~(1 << PRTIM1);    //Disable power reduction mode on timer 1 ((Might need to be changed...))
+  TCCR1B |= ((1 << WGM12) | (1 << CS11));// | (1 << CS10)); //Set prescalaer to 64
+  OCR1A = 2358;              //Set count value
+  TIMSK1 = (1 << OCIE1A);
+
+  sei();
+}
+
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+//Arduino Main Program Loop
+//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
+void loop(){
+  if(MySerial.available()){
+    ReceiveBuffer = "";
+    while(MySerial.available()){
+      int temp = MySerial.read();
+      if(isDigit(temp)){
+        ReceiveBuffer += char(temp);
+      }
+    }
+    //XAxis.SetDelay(ReceiveBuffer.toInt());
+    //YAxis.SetDelay(ReceiveBuffer.toInt());
+    //ZAxis.SetDelay(ReceiveBuffer.toInt());
+
+    MySerial.println(XAxis.SetRPM(ReceiveBuffer.toInt()));
+
+  }
+
+
+  //ZAxis.StepForward();
+
+
+  if(digitalRead(p_XJL)){
+    myDriver.MoveToPosition(1);
+  }
+  else if(digitalRead(p_XJR)){
+    //myDriver.MoveToPosition(1);
+  }
+
+  if(digitalRead(p_YJF)){
+    //YAxis.StepForward();
+  }
+  else if(digitalRead(p_YJB)){
+    //YAxis.StepBackward();
+  }
+
+}
+
+
+
+
+
+
+

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/DefinesAndMacros.h

@@ -0,0 +1,380 @@
+/*
+ * DefinesAndMacros.h
+ *
+ * Created: 8/9/2014 1:13:12 PM
+ *  Author: corwin
+ */ 
+
+
+#ifndef DEFINESANDMACROS_H_
+#define DEFINESANDMACROS_H_
+//////////Led state defines//////////
+#define L_RDY		0
+#define L_STARTUP	1
+#define L_HOME		2
+#define L_CAL		3
+#define L_RUN		4
+#define L_SOFTERR	5
+#define L_ERR		6
+
+//////////End led state defines//////////
+
+//////////
+#include "usart_driver.h"
+
+#define UARTBUFFERSIZE 100
+
+uint8_t sendArray[UARTBUFFERSIZE];
+uint8_t receiveArray[UARTBUFFERSIZE];
+
+USART_data_t usartData;
+//////////
+
+#define LOWSTATE 0
+#define HIGHSTATE 1
+
+#define ISINPUT 0
+#define ISOUTPUT 1
+
+#define TRUE 1
+#define FALSE 0
+
+#define PIN__STEP_EN PIN4_bm
+#define PORT__STEP_EN PORTF
+#define PINDIR__STEP_EN ISOUTPUT
+#define INITSTATE__STEP_EN HIGHSTATE
+#define STEP_EN_SET() PORT__STEP_EN.OUTSET = PIN__STEP_EN
+#define STEP_EN_CLR() PORT__STEP_EN.OUTCLR = PIN__STEP_EN
+
+
+#define PIN__X_FAULT PIN5_bm
+#define PORT__X_FAULT PORTC
+#define PINDIR__X_FAULT ISINPUT
+#define INITSTATE__X_FAULT HIGHSTATE
+#define X_FAULT_GET() (PORTC.IN & PIN__X_FAULT)
+
+
+#define PIN__X_DIR PIN3_bm
+#define PORT__X_DIR PORTC
+#define PINDIR__X_DIR ISOUTPUT
+#define INITSTATE__X_DIR LOWSTATE
+#define X_DIR_SET() PORT__X_DIR.OUTSET = PIN__X_DIR
+#define X_DIR_CLR() PORT__X_DIR.OUTCLR = PIN__X_DIR
+
+
+#define PIN__X_STEP PIN4_bm
+#define PORT__X_STEP PORTC
+#define PINDIR__X_STEP ISOUTPUT
+#define INITSTATE__X_STEP LOWSTATE
+#define X_STEP_SET() PORT__X_STEP.OUTSET = PIN__X_STEP
+#define X_STEP_CLR() PORT__X_STEP.OUTCLR = PIN__X_STEP
+
+
+#define PIN__X_M0 PIN0_bm
+#define PORT__X_M0 PORTC
+#define PINDIR__X_M0 ISOUTPUT
+#define INITSTATE__X_M0 LOWSTATE
+#define X_M0_SET() PORT__X_M0.OUTSET = PIN__X_M0
+#define X_M0_CLR() PORT__X_M0.OUTCLR = PIN__X_M0
+
+
+#define PIN__X_M1 PIN1_bm
+#define PORT__X_M1 PORTC
+#define PINDIR__X_M1 ISOUTPUT
+#define INITSTATE__X_M1 HIGHSTATE
+#define X_M1_SET() PORT__X_M1.OUTSET = PIN__X_M1
+#define X_M1_CLR() PORT__X_M1.OUTCLR = PIN__X_M1
+
+
+#define PIN__X_M2 PIN2_bm
+#define PORT__X_M2 PORTC
+#define PINDIR__X_M2 ISOUTPUT
+#define INITSTATE__X_M2 LOWSTATE
+#define X_M2_SET() PORT__X_M2.OUTSET = PIN__X_M2
+#define X_M2_CLR() PORT__X_M2.OUTCLR = PIN__X_M2
+
+
+#define PIN__Y_FAULT PIN3_bm
+#define PORT__Y_FAULT PORTD
+#define PINDIR__Y_FAULT ISINPUT
+#define INITSTATE__Y_FAULT HIGHSTATE
+#define Y_FAULT_GET() (PORTD.IN & PIN__Y_FAULT)
+
+
+#define PIN__Y_DIR PIN1_bm
+#define PORT__Y_DIR PORTD
+#define PINDIR__Y_DIR ISOUTPUT
+#define INITSTATE__Y_DIR LOWSTATE
+#define Y_DIR_SET() PORT__Y_DIR.OUTSET = PIN__Y_DIR
+#define Y_DIR_CLR() PORT__Y_DIR.OUTCLR = PIN__Y_DIR
+
+
+#define PIN__Y_STEP PIN2_bm
+#define PORT__Y_STEP PORTD
+#define PINDIR__Y_STEP ISOUTPUT
+#define INITSTATE__Y_STEP LOWSTATE
+#define Y_STEP_SET() PORT__Y_STEP.OUTSET = PIN__Y_STEP
+#define Y_STEP_CLR() PORT__Y_STEP.OUTCLR = PIN__Y_STEP
+
+
+#define PIN__Y_M0 PIN6_bm
+#define PORT__Y_M0 PORTC
+#define PINDIR__Y_M0 ISOUTPUT
+#define INITSTATE__Y_M0 LOWSTATE
+#define Y_M0_SET() PORT__Y_M0.OUTSET = PIN__Y_M0
+#define Y_M0_CLR() PORT__Y_M0.OUTCLR = PIN__Y_M0
+
+
+#define PIN__Y_M1 PIN7_bm
+#define PORT__Y_M1 PORTC
+#define PINDIR__Y_M1 ISOUTPUT
+#define INITSTATE__Y_M1 HIGHSTATE
+#define Y_M1_SET() PORT__Y_M1.OUTSET = PIN__Y_M1
+#define Y_M1_CLR() PORT__Y_M1.OUTCLR = PIN__Y_M1
+
+
+#define PIN__Y_M2 PIN0_bm
+#define PORT__Y_M2 PORTD
+#define PINDIR__Y_M2 ISOUTPUT
+#define INITSTATE__Y_M2 LOWSTATE
+#define Y_M2_SET() PORT__Y_M2.OUTSET = PIN__Y_M2
+#define Y_M2_CLR() PORT__Y_M2.OUTCLR = PIN__Y_M2
+
+
+#define PIN__Z_FAULT PIN1_bm
+#define PORT__Z_FAULT PORTE
+#define PINDIR__Z_FAULT ISINPUT
+#define INITSTATE__Z_FAULT HIGHSTATE
+#define Z_FAULT_GET() (PORTE.IN & PIN__Z_FAULT)
+
+
+#define PIN__Z_DIR PIN7_bm
+#define PORT__Z_DIR PORTD
+#define PINDIR__Z_DIR ISOUTPUT
+#define INITSTATE__Z_DIR LOWSTATE
+#define Z_DIR_SET() PORT__Z_DIR.OUTSET = PIN__Z_DIR
+#define Z_DIR_CLR() PORT__Z_DIR.OUTCLR = PIN__Z_DIR
+
+
+#define PIN__Z_STEP PIN0_bm
+#define PORT__Z_STEP PORTE
+#define PINDIR__Z_STEP ISOUTPUT
+#define INITSTATE__Z_STEP LOWSTATE
+#define Z_STEP_SET() PORT__Z_STEP.OUTSET = PIN__Z_STEP
+#define Z_STEP_CLR() PORT__Z_STEP.OUTCLR = PIN__Z_STEP
+
+
+#define PIN__Z_M0 PIN4_bm
+#define PORT__Z_M0 PORTD
+#define PINDIR__Z_M0 ISOUTPUT
+#define INITSTATE__Z_M0 HIGHSTATE
+#define Z_M0_SET() PORT__Z_M0.OUTSET = PIN__Z_M0
+#define Z_M0_CLR() PORT__Z_M0.OUTCLR = PIN__Z_M0
+
+
+#define PIN__Z_M1 PIN5_bm
+#define PORT__Z_M1 PORTD
+#define PINDIR__Z_M1 ISOUTPUT
+#define INITSTATE__Z_M1 HIGHSTATE
+#define Z_M1_SET() PORT__Z_M1.OUTSET = PIN__Z_M1
+#define Z_M1_CLR() PORT__Z_M1.OUTCLR = PIN__Z_M1
+
+
+#define PIN__Z_M2 PIN6_bm
+#define PORT__Z_M2 PORTD
+#define PINDIR__Z_M2 ISOUTPUT
+#define INITSTATE__Z_M2 HIGHSTATE
+#define Z_M2_SET() PORT__Z_M2.OUTSET = PIN__Z_M2
+#define Z_M2_CLR() PORT__Z_M2.OUTCLR = PIN__Z_M2
+
+
+#define PIN__A_FAULT PIN7_bm
+#define PORT__A_FAULT PORTE
+#define PINDIR__A_FAULT ISINPUT
+#define INITSTATE__A_FAULT HIGHSTATE
+#define A_FAULT_GET() (PORTE.IN & PIN__A_FAULT)
+
+
+#define PIN__A_DIR PIN5_bm
+#define PORT__A_DIR PORTE
+#define PINDIR__A_DIR ISOUTPUT
+#define INITSTATE__A_DIR LOWSTATE
+#define A_DIR_SET() PORT__A_DIR.OUTSET = PIN__A_DIR
+#define A_DIR_CLR() PORT__A_DIR.OUTCLR = PIN__A_DIR
+
+
+#define PIN__A_STEP PIN6_bm
+#define PORT__A_STEP PORTE
+#define PINDIR__A_STEP ISOUTPUT
+#define INITSTATE__A_STEP LOWSTATE
+#define A_STEP_SET() PORT__A_STEP.OUTSET = PIN__A_STEP
+#define A_STEP_CLR() PORT__A_STEP.OUTCLR = PIN__A_STEP
+
+
+#define PIN__A_M0 PIN2_bm
+#define PORT__A_M0 PORTE
+#define PINDIR__A_M0 ISOUTPUT
+#define INITSTATE__A_M0 LOWSTATE
+#define A_M0_SET() PORT__A_M0.OUTSET = PIN__A_M0
+#define A_M0_CLR() PORT__A_M0.OUTCLR = PIN__A_M0
+
+
+#define PIN__A_M1 PIN3_bm
+#define PORT__A_M1 PORTE
+#define PINDIR__A_M1 ISOUTPUT
+#define INITSTATE__A_M1 LOWSTATE
+#define A_M1_SET() PORT__A_M1.OUTSET = PIN__A_M1
+#define A_M1_CLR() PORT__A_M1.OUTCLR = PIN__A_M1
+
+
+#define PIN__A_M2 PIN4_bm
+#define PORT__A_M2 PORTE
+#define PINDIR__A_M2 ISOUTPUT
+#define INITSTATE__A_M2 LOWSTATE
+#define A_M2_SET() PORT__A_M2.OUTSET = PIN__A_M2
+#define A_M2_CLR() PORT__A_M2.OUTCLR = PIN__A_M2
+
+
+#define PIN__X_LIM_LEFT PIN0_bm
+#define PORT__X_LIM_LEFT PORTA
+#define PINDIR__X_LIM_LEFT ISINPUT
+#define INITSTATE__X_LIM_LEFT HIGHSTATE
+#define X_LIM_LEFT_GET() (PORTA.IN & PIN__X_LIM_LEFT)
+
+
+#define PIN__X_LIM_RIGHT PIN1_bm
+#define PORT__X_LIM_RIGHT PORTA
+#define PINDIR__X_LIM_RIGHT ISINPUT
+#define INITSTATE__X_LIM_RIGHT HIGHSTATE
+#define X_LIM_RIGHT_GET() (PORTA.IN & PIN__X_LIM_RIGHT)
+
+
+#define PIN__Y_LIM_FORW PIN2_bm
+#define PORT__Y_LIM_FORW PORTA
+#define PINDIR__Y_LIM_FORW ISINPUT
+#define INITSTATE__Y_LIM_FORW HIGHSTATE
+#define Y_LIM_FORW_GET() (PORTA.IN & PIN__Y_LIM_FORW)
+
+
+#define PIN__Y_LIM_BACK PIN3_bm
+#define PORT__Y_LIM_BACK PORTA
+#define PINDIR__Y_LIM_BACK ISINPUT
+#define INITSTATE__Y_LIM_BACK HIGHSTATE
+#define Y_LIM_BACK_GET() (PORTA.IN & PIN__Y_LIM_BACK)
+
+
+#define PIN__Z_LIM_DOWN PIN4_bm
+#define PORT__Z_LIM_DOWN PORTA
+#define PINDIR__Z_LIM_DOWN ISINPUT
+#define INITSTATE__Z_LIM_DOWN HIGHSTATE
+#define Z_LIM_DOWN_GET() (PORTA.IN & PIN__Z_LIM_DOWN)
+
+
+#define PIN__A_LIM_1 PIN5_bm
+#define PORT__A_LIM_1 PORTA
+#define PINDIR__A_LIM_1 ISINPUT
+#define INITSTATE__A_LIM_1 HIGHSTATE
+#define A_LIM_1_GET() (PORTA.IN & PIN__A_LIM_1)
+
+
+#define PIN__A_LIM_2 PIN6_bm
+#define PORT__A_LIM_2 PORTA
+#define PINDIR__A_LIM_2 ISINPUT
+#define INITSTATE__A_LIM_2 HIGHSTATE
+#define A_LIM_2_GET() (PORTA.IN & PIN__A_LIM_2)
+
+
+#define PIN__SYS_CHNG_STATE PIN7_bm
+#define PORT__SYS_CHNG_STATE PORTA
+#define PINDIR__SYS_CHNG_STATE ISINPUT
+#define INITSTATE__SYS_CHNG_STATE HIGHSTATE
+#define SYS_CHNG_STATE_GET() (PORTA.IN & PIN__SYS_CHNG_STATE)
+
+
+#define PIN__SYS_START PIN0_bm
+#define PORT__SYS_START PORTB
+#define PINDIR__SYS_START ISINPUT
+#define INITSTATE__SYS_START HIGHSTATE
+#define SYS_START_GET() (PORTB.IN & PIN__SYS_START)
+
+
+#define PIN__SYS_STOP PIN1_bm
+#define PORT__SYS_STOP PORTB
+#define PINDIR__SYS_STOP ISINPUT
+#define INITSTATE__SYS_STOP HIGHSTATE
+#define SYS_STOP_GET() (PORTB.IN & PIN__SYS_STOP)
+
+
+#define PIN__SYS_HOME PIN2_bm
+#define PORT__SYS_HOME PORTB
+#define PINDIR__SYS_HOME ISINPUT
+#define INITSTATE__SYS_HOME HIGHSTATE
+#define SYS_HOME_GET() (PORTB.IN & PIN__SYS_HOME)
+
+
+#define PIN__SYS_CAL PIN3_bm
+#define PORT__SYS_CAL PORTB
+#define PINDIR__SYS_CAL ISINPUT
+#define INITSTATE__SYS_CAL HIGHSTATE
+#define SYS_CAL_GET() (PORTB.IN & PIN__SYS_CAL)
+
+
+#define PIN__ESTOP PIN0_bm
+#define PORT__ESTOP PORTF
+#define PINDIR__ESTOP ISINPUT
+#define INITSTATE__ESTOP HIGHSTATE
+#define ESTOP_GET() (PORTF.IN & PIN__ESTOP)
+
+
+#define PIN__LIGHT_CTRL PIN1_bm
+#define PORT__LIGHT_CTRL PORTF
+#define PINDIR__LIGHT_CTRL ISOUTPUT
+#define INITSTATE__LIGHT_CTRL LOWSTATE
+#define LIGHT_CTRL_SET() PORT__LIGHT_CTRL.OUTSET = PIN__LIGHT_CTRL
+#define LIGHT_CTRL_CLR() PORT__LIGHT_CTRL.OUTCLR = PIN__LIGHT_CTRL
+
+
+#define PIN__UART_RX PIN2_bm
+#define PORT__UART_RX PORTF
+#define PINDIR__UART_RX ISINPUT
+#define INITSTATE__UART_RX HIGHSTATE
+#define UART_RX_GET() (PORTF.IN & PIN__UART_RX)
+
+
+#define PIN__UART_TX PIN3_bm
+#define PORT__UART_TX PORTF
+#define PINDIR__UART_TX ISOUTPUT
+#define INITSTATE__UART_TX HIGHSTATE
+#define UART_TX_SET() PORT__UART_TX.OUTSET = PIN__UART_TX
+#define UART_TX_CLR() PORT__UART_TX.OUTCLR = PIN__UART_TX
+
+
+#define PIN__RDY_LED PIN5_bm
+#define PORT__RDY_LED PORTF
+#define PINDIR__RDY_LED ISOUTPUT
+#define INITSTATE__RDY_LED LOWSTATE
+#define RDY_LED_SET() PORT__RDY_LED.OUTSET = PIN__RDY_LED
+#define RDY_LED_CLR() PORT__RDY_LED.OUTCLR = PIN__RDY_LED
+#define RDY_LED_TGL() PORT__RDY_LED.OUTTGL = PIN__RDY_LED
+
+
+#define PIN__RUN_LED PIN6_bm
+#define PORT__RUN_LED PORTF
+#define PINDIR__RUN_LED ISOUTPUT
+#define INITSTATE__RUN_LED LOWSTATE
+#define RUN_LED_SET() PORT__RUN_LED.OUTSET = PIN__RUN_LED
+#define RUN_LED_CLR() PORT__RUN_LED.OUTCLR = PIN__RUN_LED
+#define RUN_LED_TGL() PORT__RUN_LED.OUTTGL = PIN__RUN_LED
+
+
+#define PIN__ERR_LED PIN7_bm
+#define PORT__ERR_LED PORTF
+#define PINDIR__ERR_LED ISOUTPUT
+#define INITSTATE__ERR_LED LOWSTATE
+#define ERR_LED_SET() PORT__ERR_LED.OUTSET = PIN__ERR_LED
+#define ERR_LED_CLR() PORT__ERR_LED.OUTCLR = PIN__ERR_LED
+#define ERR_LED_TGL() PORT__ERR_LED.OUTTGL = PIN__ERR_LED
+
+
+
+#endif /* DEFINESANDMACROS_H_ */

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/InitFunctions.c

@@ -0,0 +1,331 @@
+/*
+ * InitFunctions.c
+ *
+ * Created: 8/9/2014 4:24:25 PM
+ *  Author: corwin
+ */ 
+
+#include "InitFunctions.h"
+
+
+void setupDriverBoardComplete()
+{
+	setupXMEGAIO();
+	setupXMEGAClock();
+	setupXMEGAUART();
+	setupXMEGATimers();
+	setupStepperPararms();
+	setupPinChangeInterrupts();
+	PMIC.CTRL |= PMIC_LOLVLEN_bm;
+	sei();
+}
+
+void testDriverBoardComplete()
+{
+	testStatusLeds();
+	testLightBoard();
+	testSteppers();
+	testUART();
+}
+
+void setupXMEGAIO()
+{
+	//Setup motor enable control
+	setupIOPin(&PORT__STEP_EN, PIN__STEP_EN, PINDIR__STEP_EN, INITSTATE__STEP_EN);
+	
+	//Setup X Axis motor driver
+	setupIOPin(&PORT__X_FAULT, PIN__X_FAULT, PINDIR__X_FAULT, INITSTATE__X_FAULT);
+	setupIOPin(&PORT__X_DIR, PIN__X_DIR, PINDIR__X_DIR, INITSTATE__X_DIR);
+	setupIOPin(&PORT__X_STEP, PIN__X_STEP, PINDIR__X_STEP, INITSTATE__X_STEP);
+	setupIOPin(&PORT__X_M0, PIN__X_M0, PINDIR__X_M0, INITSTATE__X_M0);
+	setupIOPin(&PORT__X_M1, PIN__X_M1, PINDIR__X_M1, INITSTATE__X_M1);
+	setupIOPin(&PORT__X_M2, PIN__X_M2, PINDIR__X_M2, INITSTATE__X_M2);
+	
+	//Setup Y Axis motor driver
+	setupIOPin(&PORT__Y_FAULT, PIN__Y_FAULT, PINDIR__Y_FAULT, INITSTATE__Y_FAULT);
+	setupIOPin(&PORT__Y_DIR, PIN__Y_DIR, PINDIR__Y_DIR, INITSTATE__Y_DIR);
+	setupIOPin(&PORT__Y_STEP, PIN__Y_STEP, PINDIR__Y_STEP, INITSTATE__Y_STEP);
+	setupIOPin(&PORT__Y_M0, PIN__Y_M0, PINDIR__Y_M0, INITSTATE__Y_M0);
+	setupIOPin(&PORT__Y_M1, PIN__Y_M1, PINDIR__Y_M1, INITSTATE__Y_M1);
+	setupIOPin(&PORT__Y_M2, PIN__Y_M2, PINDIR__Y_M2, INITSTATE__Y_M2);
+	
+	//Setup Z Axis motor driver
+	setupIOPin(&PORT__Z_FAULT, PIN__Z_FAULT, PINDIR__Z_FAULT, INITSTATE__Z_FAULT);
+	setupIOPin(&PORT__Z_DIR, PIN__Z_DIR, PINDIR__Z_DIR, INITSTATE__Z_DIR);
+	setupIOPin(&PORT__Z_STEP, PIN__Z_STEP, PINDIR__Z_STEP, INITSTATE__Z_STEP);
+	setupIOPin(&PORT__Z_M0, PIN__Z_M0, PINDIR__Z_M0, INITSTATE__Z_M0);
+	setupIOPin(&PORT__Z_M1, PIN__Z_M1, PINDIR__Z_M1, INITSTATE__Z_M1);
+	setupIOPin(&PORT__Z_M2, PIN__Z_M2, PINDIR__Z_M2, INITSTATE__Z_M2);
+	
+	//Setup A Axis motor driver
+	setupIOPin(&PORT__A_FAULT, PIN__A_FAULT, PINDIR__A_FAULT, INITSTATE__A_FAULT);
+	setupIOPin(&PORT__A_DIR, PIN__A_DIR, PINDIR__A_DIR, INITSTATE__A_DIR);
+	setupIOPin(&PORT__A_STEP, PIN__A_STEP, PINDIR__A_STEP, INITSTATE__A_STEP);
+	setupIOPin(&PORT__A_M0, PIN__A_M0, PINDIR__A_M0, INITSTATE__A_M0);
+	setupIOPin(&PORT__A_M1, PIN__A_M1, PINDIR__A_M1, INITSTATE__A_M1);
+	setupIOPin(&PORT__A_M2, PIN__A_M2, PINDIR__A_M2, INITSTATE__A_M2);
+	
+	//Setup up limits
+	setupIOPin(&PORT__X_LIM_LEFT, PIN__X_LIM_LEFT, PINDIR__X_LIM_LEFT, INITSTATE__X_LIM_LEFT);
+	setupIOPin(&PORT__X_LIM_RIGHT, PIN__X_LIM_RIGHT, PINDIR__X_LIM_RIGHT, INITSTATE__X_LIM_RIGHT);
+	
+	setupIOPin(&PORT__Y_LIM_FORW, PIN__Y_LIM_FORW, PINDIR__Y_LIM_FORW, INITSTATE__Y_LIM_FORW);
+	setupIOPin(&PORT__Y_LIM_BACK, PIN__Y_LIM_BACK, PINDIR__Y_LIM_BACK, INITSTATE__Y_LIM_BACK);
+	
+	setupIOPin(&PORT__Z_LIM_DOWN, PIN__Z_LIM_DOWN, PINDIR__Z_LIM_DOWN, INITSTATE__Z_LIM_DOWN);
+	
+	setupIOPin(&PORT__A_LIM_1, PIN__A_LIM_1, PINDIR__A_LIM_1, INITSTATE__A_LIM_1);
+	setupIOPin(&PORT__A_LIM_2, PIN__A_LIM_2, PINDIR__A_LIM_2, INITSTATE__A_LIM_2);
+	
+	
+	//Setup control panel buttons
+	setupIOPin(&PORT__SYS_CHNG_STATE, PIN__SYS_CHNG_STATE, PINDIR__SYS_CHNG_STATE, INITSTATE__SYS_CHNG_STATE);
+	setupIOPin(&PORT__SYS_START, PIN__SYS_START, PINDIR__SYS_START, INITSTATE__SYS_START);
+	setupIOPin(&PORT__SYS_STOP, PIN__SYS_STOP, PINDIR__SYS_STOP, INITSTATE__SYS_STOP);
+	setupIOPin(&PORT__SYS_HOME, PIN__SYS_HOME, PINDIR__SYS_HOME, INITSTATE__SYS_HOME);
+	setupIOPin(&PORT__SYS_CAL, PIN__SYS_CAL, PINDIR__SYS_CAL, INITSTATE__SYS_CAL);
+	
+	//Setup ESTOP
+	setupIOPin(&PORT__ESTOP, PIN__ESTOP, PINDIR__ESTOP, INITSTATE__ESTOP);
+	
+	//Setup pin for light board control
+	setupIOPin(&PORT__LIGHT_CTRL, PIN__LIGHT_CTRL, PINDIR__LIGHT_CTRL, INITSTATE__LIGHT_CTRL);
+	
+	//Setup pins for uart communication
+	setupIOPin(&PORT__UART_RX, PIN__UART_RX, PINDIR__UART_RX, INITSTATE__UART_RX);
+	setupIOPin(&PORT__UART_TX, PIN__UART_TX, PINDIR__UART_TX, INITSTATE__UART_TX);
+	
+	//Setup status led board
+	setupIOPin(&PORT__RDY_LED, PIN__RDY_LED, PINDIR__RDY_LED, INITSTATE__RDY_LED);
+	setupIOPin(&PORT__RUN_LED, PIN__RUN_LED, PINDIR__RUN_LED, INITSTATE__RUN_LED);
+	setupIOPin(&PORT__ERR_LED, PIN__ERR_LED, PINDIR__ERR_LED, INITSTATE__ERR_LED);
+	
+	//Show initialization led sequence to show end of initialization
+}
+
+void setupXMEGAClock()
+{
+	int temp = 0;																			//Temporary variable for helping avoid 4 clock cycle limitation when updating secure registers
+	
+	//Enable external 8MHz oscillator
+	OSC.XOSCCTRL = (OSC_FRQRANGE_2TO9_gc | OSC_XOSCSEL_XTAL_16KCLK_gc);						//Set external oscillator to be between 2 and 9 MHz and select it
+	OSC.CTRL |= OSC_XOSCEN_bm;																//Enable the external oscillator
+	while(!(OSC.STATUS & OSC_XOSCRDY_bm)){ERR_LED_SET();};									//While the external oscillator is not ready, set the error led
+	ERR_LED_CLR();																			//Clear the error led if the external oscillator has stabilized
+	
+	//Enable phase locked loop to multiply external oscillator by 4 to get 32MHz
+	temp = ((OSC_PLLSRC_XOSC_gc & OSC_PLLSRC_gm) | (OSC_PLLFAC_gm & 4));				//Set the external oscillator as the clock source for the pll and set to multiply by 4
+	CCP = CCP_IOREG_gc;																		//Disable register security so we can update the pll control settings
+	OSC.PLLCTRL = temp;																		//Write pll control settings to register
+	OSC.CTRL |= OSC_PLLEN_bm;																//Enable the pll
+	while(!(OSC.STATUS & OSC_PLLRDY_bm)){ERR_LED_SET();};									//While the pll is not ready, set the error led
+	ERR_LED_CLR();																			//Disable the error led if successfully stabilized
+	
+	//Set system pll clock divisions and set up as source for all system clocks
+	temp = ((CLK_PSADIV_gm & CLK_PSADIV_1_gc) | (CLK_PSBCDIV_gm & CLK_PSBCDIV_1_1_gc));		//Set system to use pll divided by 1 (no division)
+	CCP = CCP_IOREG_gc;																		//Disable register security so we can update the clock source division setting
+	CLK.CTRL = temp;																		//Write division settings to register
+	
+	temp = CLK_SCLKSEL_PLL_gc;																//Set pll as system clock source
+	CCP = CCP_IOREG_gc;																		//Disable register security so we can update the system clock
+	CLK.CTRL = temp;																		//Write clock source settings to register
+}
+
+void setupXMEGATimers()
+{
+	setupRTC();
+	setupStepDriveTimer();	
+}
+
+void setupXMEGAUART()
+{
+	USART_InterruptDriver_Initialize(&usartData, &USARTF0, USART_DREINTLVL_LO_gc);				//Initialize USARTC0 as interrupt driven serial and clear it's buffers
+	USART_Format_Set(usartData.usart, USART_CHSIZE_8BIT_gc, USART_PMODE_DISABLED_gc, false);	//Set the data format of 8 bits, no parity, 1 stop bit
+	USART_RxdInterruptLevel_Set(usartData.usart, USART_RXCINTLVL_LO_gc);						//Enable the receive interrupt
+	USART_Baudrate_Set(&USARTF0, 207 , 0);														//Set baudrate to 9600 with 32Mhz system clock
+	USART_Rx_Enable(usartData.usart);															//Enable receiving over serial
+	USART_Tx_Enable(usartData.usart);															//Enable transmitting over serial
+	//PMIC.CTRL |= PMIC_LOLVLEX_bm;																//Enable serial interrupts
+}
+
+void setupStepperPararms()
+{
+	XAxis.dirPort = &PORT__X_DIR;
+	XAxis.dirPin = PIN__X_DIR;
+	XAxis.stepPort = &PORT__X_STEP;
+	XAxis.stepPin = PIN__X_STEP;
+	XAxis.directionReversed = TRUE;
+	XAxis.inManualMode = FALSE;
+	XAxis.stepsPerMM = 250;
+	XAxis.mmFromZero = 0;
+	XAxis.acceptableError = .005;
+	XAxis.steps = 0;
+	XAxis.shouldMove = FALSE;
+	
+	YAxis.dirPort = &PORT__Y_DIR;
+	YAxis.dirPin = PIN__Y_DIR;
+	YAxis.stepPort = &PORT__Y_STEP;
+	YAxis.stepPin = PIN__Y_STEP;
+	YAxis.directionReversed = FALSE;
+	YAxis.inManualMode = FALSE;
+	YAxis.stepsPerMM = 250;
+	YAxis.mmFromZero = 0;
+	YAxis.acceptableError = .005;
+	YAxis.steps = 0;
+	YAxis.shouldMove = FALSE;
+		
+	ZAxis.dirPort = &PORT__Z_DIR;
+	ZAxis.dirPin = PIN__Z_DIR;
+	ZAxis.stepPort = &PORT__Z_STEP;
+	ZAxis.stepPin = PIN__Z_STEP;
+	ZAxis.directionReversed = FALSE;
+	ZAxis.inManualMode = FALSE;
+	ZAxis.stepsPerMM = 323;
+	ZAxis.mmFromZero = 8.25;
+	ZAxis.acceptableError = .004;
+	ZAxis.steps = 0;
+	ZAxis.shouldMove = FALSE;
+	
+	
+	AAxis.dirPort = &PORT__A_DIR;
+	AAxis.dirPin = PIN__A_DIR;
+	AAxis.stepPort = &PORT__A_STEP;
+	AAxis.stepPin = PIN__A_STEP;
+	AAxis.directionReversed = TRUE;
+	AAxis.inManualMode = FALSE;
+	AAxis.stepsPerMM = 250;
+	AAxis.mmFromZero = 0;
+	AAxis.acceptableError = .005;
+	AAxis.steps = 0;
+	AAxis.shouldMove = FALSE;
+}
+
+void setupPinChangeInterrupts(){
+	PORT__ESTOP.PIN0CTRL |= PORT_OPC_PULLUP_gc | PORT_ISC_FALLING_gc;
+	PORT__ESTOP.INT0MASK |= PIN__ESTOP;
+	PORT__ESTOP.INTCTRL |= PORT_INT0LVL_LO_gc;
+	
+	PORT__SYS_HOME.PIN2CTRL |= PORT_OPC_PULLUP_gc | PORT_ISC_FALLING_gc;
+	PORT__SYS_HOME.INT0MASK |= PIN__SYS_HOME;
+	PORT__SYS_HOME.INTCTRL |= PORT_INT0LVL_LO_gc;
+	
+	PORT__SYS_CAL.PIN3CTRL |= PORT_OPC_PULLUP_gc | PORT_ISC_FALLING_gc;
+	PORT__SYS_CAL.INT0MASK |= PIN__SYS_CAL;
+	PORT__SYS_CAL.INTCTRL |= PORT_INT0LVL_LO_gc;
+	
+	PORT__SYS_START.PIN0CTRL |= PORT_OPC_PULLUP_gc | PORT_ISC_FALLING_gc;
+	PORT__SYS_START.INT0MASK |= PIN__SYS_START;
+	PORT__SYS_START.INTCTRL |= PORT_INT0LVL_LO_gc;
+}
+
+void setupSystemParams(){
+	btnState.estopPressed = FALSE;
+	btnState.startPressed = FALSE;
+	btnState.stopPressed = FALSE;
+	btnState.homePressed = FALSE;
+	btnState.calibratePressed = FALSE;
+}
+
+void testStatusLeds()
+{
+	for(int i = 0 ; i < 3 ; i++){
+		RDY_LED_SET();
+		ERR_LED_CLR();
+		_delay_ms(200);
+		RUN_LED_SET();
+		RDY_LED_CLR();
+		_delay_ms(200);
+		RUN_LED_CLR();
+		ERR_LED_SET();
+		_delay_ms(200);
+	}
+	
+	for(int i = 0 ; i < 3 ; i++){
+		RDY_LED_SET();
+		RUN_LED_SET();
+		ERR_LED_SET();
+		_delay_ms(200);
+		RUN_LED_CLR();
+		RDY_LED_CLR();
+		ERR_LED_CLR();
+		_delay_ms(200);
+	}	
+	RDY_LED_CLR();
+	RUN_LED_CLR();
+	ERR_LED_CLR();
+}
+
+void testLightBoard()
+{
+	LIGHT_CTRL_SET();
+	_delay_ms(1250);
+	LIGHT_CTRL_CLR();
+}
+
+void testSteppers()
+{
+}
+
+void testUART()
+{
+	
+}
+
+void setupIOPin(PORT_t *port, int pinbm, char direction, char defaultstate)
+{
+	if(direction == ISINPUT){
+		port->DIRCLR = pinbm;
+	}else if(direction == ISOUTPUT){
+		port->DIRSET = pinbm;
+	}
+	
+	if(defaultstate == LOWSTATE){
+		port->OUTCLR = pinbm;
+	}else if(defaultstate == HIGHSTATE){
+		port->OUTSET = pinbm;
+	}
+	
+}
+
+void setupRTC()
+{
+	OSC.CTRL |= OSC_RC32KEN_bm;											//Enable 32.768KHz oscillator
+	while(!(OSC.STATUS & OSC_RC32KRDY_bm)){ERR_LED_SET();}	;			//Wait for oscillator to stabilize, light error led while not
+	ERR_LED_CLR();														//Now stabilized, turn off the error led
+	CLK.RTCCTRL = (CLK_RTCSRC_RCOSC_gc | CLK_RTCEN_bm);					//Set RTC clock source to be the internal oscillator and enable
+	while(RTC.STATUS & RTC_SYNCBUSY_bm){ERR_LED_SET();};				//Wait for RTC to no longer be busy, set error led while it is
+	ERR_LED_CLR();
+	
+	RTC.PER = 10;														//
+	RTC.CNT = 0;														//Zero the count register
+	RTC.COMP = 0;														//Set compare value to zero
+	RTC.CTRL = RTC_PRESCALER_DIV1_gc;									//Set prescaler to clk / 1
+	RTC.INTCTRL = (RTC_OVFINTLVL_LO_gc | RTC_COMPINTLVL_OFF_gc);
+}
+
+void setupStepDriveTimer()
+{
+	//For X Axis
+	TCC0.CTRLA = TC_CLKSEL_DIV1_gc; //125000 counts per second with 32Mhz Processor
+	TCC0.CTRLB = TC_WGMODE_NORMAL_gc;
+	TCC0.PER = 9216;
+	TCC0.INTCTRLA = TC_OVFINTLVL_LO_gc;
+	
+	//For Y Axis
+	TCD0.CTRLA = TC_CLKSEL_DIV1_gc; //31250 counts per second with 32Mhz Processor
+	TCD0.CTRLB = TC_WGMODE_NORMAL_gc;
+	TCD0.PER = 9216;
+	TCD0.INTCTRLA = TC_OVFINTLVL_LO_gc;
+	
+	//For Z Axis
+	TCE0.CTRLA = TC_CLKSEL_DIV1_gc; //31250 counts per second with 32Mhz Processor
+	TCE0.CTRLB = TC_WGMODE_NORMAL_gc;
+	TCE0.PER = 9216;
+	TCE0.INTCTRLA = TC_OVFINTLVL_LO_gc;
+	
+	//For A Axis
+	TCF0.CTRLA = TC_CLKSEL_DIV1_gc; //31250 counts per second with 32Mhz Processor
+	TCF0.CTRLB = TC_WGMODE_NORMAL_gc;
+	TCF0.PER = 9216;
+	TCF0.INTCTRLA = TC_OVFINTLVL_LO_gc;
+}

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/InitFunctions.h

@@ -0,0 +1,44 @@
+/*
+ * InitFunctions.h
+ *
+ * Created: 8/9/2014 4:24:44 PM
+ *  Author: corwin
+ */ 
+
+
+#ifndef INITFUNCTIONS_H_
+#define INITFUNCTIONS_H_
+#define F_CPU 32000000UL
+
+#include <avr/io.h>
+#include <util/delay.h>
+
+#include "avr_compiler.h"
+#include "DefinesAndMacros.h"
+#include "usart_driver.h"
+#include "Steppers.h"
+#include "SystemInputFunctions.h"
+
+
+void setupDriverBoardComplete();
+void testDriverBoardComplete();
+
+void setupXMEGAIO();
+void setupXMEGAClock();
+void setupXMEGAUART();
+void setupXMEGATimers();
+void setupStepperPararms();
+void setupPinChangeInterrupts();
+void setupSystemParams();
+
+void testStatusLeds();
+void testLightBoard();
+void testSteppers();
+void testUART();
+
+void setupIOPin(PORT_t *port, int pinbm, char direction, char defaultstate);
+void setupRTC();
+void setupStepDriveTimer();
+
+
+#endif /* INITFUNCTIONS_H_ */

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/PickAndPlaceDriverBoardRev2.0.atsln

@@ -0,0 +1,20 @@
+
+Microsoft Visual Studio Solution File, Format Version 11.00
+# Atmel Studio Solution File, Format Version 11.00
+Project("{54F91283-7BC4-4236-8FF9-10F437C3AD48}") = "PickAndPlaceDriverBoardRev2.0", "PickAndPlaceDriverBoardRev2.0.cproj", "{E3FF968B-6C08-4B3E-995E-ED8AF6D18F09}"
+EndProject
+Global
+	GlobalSection(SolutionConfigurationPlatforms) = preSolution
+		Debug|AVR = Debug|AVR
+		Release|AVR = Release|AVR
+	EndGlobalSection
+	GlobalSection(ProjectConfigurationPlatforms) = postSolution
+		{E3FF968B-6C08-4B3E-995E-ED8AF6D18F09}.Debug|AVR.ActiveCfg = Debug|AVR
+		{E3FF968B-6C08-4B3E-995E-ED8AF6D18F09}.Debug|AVR.Build.0 = Debug|AVR
+		{E3FF968B-6C08-4B3E-995E-ED8AF6D18F09}.Release|AVR.ActiveCfg = Release|AVR
+		{E3FF968B-6C08-4B3E-995E-ED8AF6D18F09}.Release|AVR.Build.0 = Release|AVR
+	EndGlobalSection
+	GlobalSection(SolutionProperties) = preSolution
+		HideSolutionNode = FALSE
+	EndGlobalSection
+EndGlobal

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/PickAndPlaceDriverBoardRev2.0.c

@@ -0,0 +1,206 @@
+/*
+ * PickAndPlaceDriverBoardRev2.c
+ *
+ * Created: 8/6/2014 5:56:07 PM
+ *  Author: corwin
+ */ 
+#define F_CPU 32000000UL
+
+#include <avr/io.h>
+#include <util/delay.h>
+#include <stdio.h>
+
+#include "DefinesAndMacros.h"
+#include "usart_driver.h"
+#include "InitFunctions.h"
+#include "TimerCounterFunctionsAndISR.h"
+#include "SystemInputFunctions.h"
+#include "Steppers.h"
+#include "SystemInputFunctions.h"
+
+#define MANUALCONTROLSTEPSIZE 1
+
+enum SystemStates{
+	systemInitialization,
+	connectToHost,
+	connectedWaitForStart,
+	disconnectedWaitForStart,
+	runSequence,
+	homeAxes,
+	calibrateAxes,
+	manualControl
+}systemState = systemInitialization, systemStatePrevious = systemInitialization;
+
+bool switchToManualMode(){
+	PreviousTime = CurrentTime;
+	while(!SYS_CHNG_STATE_GET()){
+		if((CurrentTime-PreviousTime) >= 2){
+			return true;
+		}
+	}
+	return false;
+}
+
+void roughManualControl(){
+	static char manState = 0;
+	
+	if(manState == 0){
+		if(!SYS_START_GET()){
+			XAxis.desiredPosition = (getAxisPosition(&XAxis) - MANUALCONTROLSTEPSIZE);
+			XAxis.shouldMove = TRUE;
+		}else if(!SYS_STOP_GET()){
+			XAxis.desiredPosition = (getAxisPosition(&XAxis) + MANUALCONTROLSTEPSIZE);
+			XAxis.shouldMove = TRUE;
+		}
+		
+		if(!SYS_HOME_GET()){
+			YAxis.desiredPosition = (getAxisPosition(&YAxis) - MANUALCONTROLSTEPSIZE);
+			YAxis.shouldMove = TRUE;
+		}else if(!SYS_CAL_GET()){
+			YAxis.desiredPosition = (getAxisPosition(&YAxis) + MANUALCONTROLSTEPSIZE);
+			YAxis.shouldMove = TRUE;
+		}
+	}else if(manState == 1){
+		if(!SYS_HOME_GET()){
+			ZAxis.desiredPosition = (getAxisPosition(&ZAxis) + MANUALCONTROLSTEPSIZE);
+			ZAxis.shouldMove = TRUE;
+		}else if(!SYS_CAL_GET()){
+			ZAxis.desiredPosition = (getAxisPosition(&ZAxis) - MANUALCONTROLSTEPSIZE);
+			ZAxis.shouldMove = TRUE;
+		}
+		
+	}
+	_delay_us(500);
+	if(!SYS_CHNG_STATE_GET()){
+		manState = !manState;
+		_delay_ms(500);
+	}
+}
+
+int main(void)
+{
+
+    while(1){
+//////////Initialize System//////////
+		if(systemState == systemInitialization){
+			setupDriverBoardComplete();
+			testDriverBoardComplete();
+			RDY_LED_SET();
+			systemState = connectToHost;
+//////////End initialize system//////////
+
+//////////Wait for host connection//////////
+		}else if(systemState == connectToHost){
+			if(btnState.startPressed == TRUE){
+				enableSteppers();
+				char jump = 5;
+				
+				XAxis.desiredPosition = 10;
+				YAxis.desiredPosition = 10;
+				
+				while(1){
+					//sprintf((char *)sendArray,  "Current jump size is %d.\r\n", jump);
+
+				//	for(int i = 0 ; sendArray[i] != '\0' ; i++){
+				//		while (!USART_IsTXDataRegisterEmpty(&USARTF0));
+				//		USART_TXBuffer_PutByte(&usartData ,sendArray[i]);
+				//	}
+
+					YAxis.desiredPosition += jump;
+					YAxis.shouldMove = TRUE;
+					while(XAxis.shouldMove || YAxis.shouldMove);
+					
+					XAxis.desiredPosition += jump;
+					XAxis.shouldMove = TRUE;
+					while(XAxis.shouldMove || YAxis.shouldMove);
+					
+
+					YAxis.desiredPosition = 10;
+
+					YAxis.shouldMove = TRUE;
+					while(XAxis.shouldMove || YAxis.shouldMove);
+					
+					XAxis.desiredPosition = 10;
+					XAxis.shouldMove = TRUE;
+					while(XAxis.shouldMove || YAxis.shouldMove);
+					jump += 5;
+					
+				}
+				disableSteppers();
+			}else if(btnState.homePressed){
+				systemState = homeAxes;
+				systemStatePrevious = connectToHost;
+			}else if(btnState.calibratePressed == TRUE){
+				systemState = calibrateAxes;
+				systemStatePrevious = connectToHost;
+			}else if(switchToManualMode() == true){
+				systemState = manualControl;
+				systemStatePrevious = connectToHost;
+				enableSteppers();
+				XAxis.inManualMode = TRUE;
+				YAxis.inManualMode = TRUE;
+				ZAxis.inManualMode = TRUE;
+				AAxis.inManualMode = TRUE;
+				_delay_ms(1500);
+			}
+//////////End wait for host connection//////////
+
+//////////Connected to Host and wait for start//////////
+		}else if(systemState == connectedWaitForStart){
+			
+
+//////////End connected to host and wait for start//////////			
+		}else if(systemState == disconnectedWaitForStart){
+		
+//////////End connect to host and wait for start//////////
+
+//////////Start pick and place run sequence//////////
+		}else if(systemState == runSequence){
+			
+//////////End start pick and place run sequence//////////
+
+//////////Home system axes to zero position//////////
+		}else if(systemState == homeAxes){
+			enableSteppers();
+			homeAllSteppers();
+			disableSteppers();
+			btnState.homePressed = FALSE;
+			systemState = systemStatePrevious;
+			systemStatePrevious = homeAxes;		
+//////////End home system axes//////////
+			
+/////////Calibrate system stepper axes//////////
+		}else if(systemState == calibrateAxes){
+			ERR_LED_CLR();
+			enableSteppers();
+			calibrateAllSteppers();
+			btnState.calibratePressed = FALSE;
+			if(systemStatePrevious == systemInitialization){
+				systemState = connectToHost;
+			}else{
+				systemState = systemStatePrevious;
+			}
+			systemStatePrevious = calibrateAxes;
+//////////End calibrate system stepper axes//////////
+
+
+//////////Manual control of system axes//////////
+		}else if(systemState == manualControl){
+			roughManualControl();
+			if(switchToManualMode() == true){
+				XAxis.inManualMode = FALSE;
+				YAxis.inManualMode = FALSE;
+				ZAxis.inManualMode = FALSE;
+				AAxis.inManualMode = FALSE;
+				btnState.homePressed = FALSE;
+				btnState.startPressed = FALSE;
+				btnState.stopPressed = FALSE;
+				btnState.calibratePressed = FALSE;
+				disableSteppers();
+				systemState = systemStatePrevious;
+				systemStatePrevious = manualControl;
+			}
+		}
+//////////End manual control of system axes//////////
+	}
+}

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/PickAndPlaceDriverBoardRev2.0.cproj

@@ -0,0 +1,157 @@
+<?xml version="1.0" encoding="utf-8"?>
+<Project DefaultTargets="Build" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
+  <PropertyGroup>
+    <SchemaVersion>2.0</SchemaVersion>
+    <ProjectVersion>6.2</ProjectVersion>
+    <ToolchainName>com.Atmel.AVRGCC8.C</ToolchainName>
+    <ProjectGuid>{e3ff968b-6c08-4b3e-995e-ed8af6d18f09}</ProjectGuid>
+    <avrdevice>ATxmega256A3U</avrdevice>
+    <avrdeviceseries>none</avrdeviceseries>
+    <OutputType>Executable</OutputType>
+    <Language>C</Language>
+    <OutputFileName>$(MSBuildProjectName)</OutputFileName>
+    <OutputFileExtension>.elf</OutputFileExtension>
+    <OutputDirectory>$(MSBuildProjectDirectory)\$(Configuration)</OutputDirectory>
+    <AssemblyName>PickAndPlaceDriverBoardRev2.0</AssemblyName>
+    <Name>PickAndPlaceDriverBoardRev2.0</Name>
+    <RootNamespace>PickAndPlaceDriverBoardRev2.0</RootNamespace>
+    <ToolchainFlavour>Native</ToolchainFlavour>
+    <KeepTimersRunning>true</KeepTimersRunning>
+    <OverrideVtor>false</OverrideVtor>
+    <CacheFlash>true</CacheFlash>
+    <ProgFlashFromRam>true</ProgFlashFromRam>
+    <RamSnippetAddress>0x20000000</RamSnippetAddress>
+    <UncachedRange />
+    <OverrideVtorValue>exception_table</OverrideVtorValue>
+    <BootSegment>2</BootSegment>
+    <eraseonlaunchrule>0</eraseonlaunchrule>
+    <AsfFrameworkConfig>
+      <framework-data xmlns="">
+        <options />
+        <configurations />
+        <files />
+        <documentation help="" />
+        <offline-documentation help="" />
+        <dependencies>
+          <content-extension eid="atmel.asf" uuidref="Atmel.ASF" version="3.18.1" />
+        </dependencies>
+      </framework-data>
+    </AsfFrameworkConfig>
+    <avrtool>com.atmel.avrdbg.tool.avrdragon</avrtool>
+    <com_atmel_avrdbg_tool_avrdragon>
+      <ToolOptions>
+        <InterfaceProperties>
+          <JtagEnableExtResetOnStartSession>false</JtagEnableExtResetOnStartSession>
+        </InterfaceProperties>
+        <InterfaceName>JTAG</InterfaceName>
+      </ToolOptions>
+      <ToolType>com.atmel.avrdbg.tool.avrdragon</ToolType>
+      <ToolNumber>00A200050749</ToolNumber>
+      <ToolName>AVR Dragon</ToolName>
+    </com_atmel_avrdbg_tool_avrdragon>
+    <avrtoolinterface>JTAG</avrtoolinterface>
+  </PropertyGroup>
+  <PropertyGroup Condition=" '$(Configuration)' == 'Release' ">
+    <ToolchainSettings>
+      <AvrGcc>
+        <avrgcc.common.optimization.RelaxBranches>True</avrgcc.common.optimization.RelaxBranches>
+        <avrgcc.common.outputfiles.hex>True</avrgcc.common.outputfiles.hex>
+        <avrgcc.common.outputfiles.lss>True</avrgcc.common.outputfiles.lss>
+        <avrgcc.common.outputfiles.eep>True</avrgcc.common.outputfiles.eep>
+        <avrgcc.common.outputfiles.srec>True</avrgcc.common.outputfiles.srec>
+        <avrgcc.common.outputfiles.usersignatures>False</avrgcc.common.outputfiles.usersignatures>
+        <avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>True</avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>
+        <avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>True</avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>
+        <avrgcc.compiler.symbols.DefSymbols>
+          <ListValues>
+            <Value>NDEBUG</Value>
+          </ListValues>
+        </avrgcc.compiler.symbols.DefSymbols>
+        <avrgcc.compiler.optimization.level>Optimize for size (-Os)</avrgcc.compiler.optimization.level>
+        <avrgcc.compiler.optimization.PackStructureMembers>True</avrgcc.compiler.optimization.PackStructureMembers>
+        <avrgcc.compiler.optimization.AllocateBytesNeededForEnum>True</avrgcc.compiler.optimization.AllocateBytesNeededForEnum>
+        <avrgcc.compiler.warnings.AllWarnings>True</avrgcc.compiler.warnings.AllWarnings>
+        <avrgcc.linker.libraries.Libraries>
+          <ListValues>
+            <Value>libm</Value>
+          </ListValues>
+        </avrgcc.linker.libraries.Libraries>
+      </AvrGcc>
+    </ToolchainSettings>
+  </PropertyGroup>
+  <PropertyGroup Condition=" '$(Configuration)' == 'Debug' ">
+    <ToolchainSettings>
+      <AvrGcc>
+  <avrgcc.common.optimization.RelaxBranches>True</avrgcc.common.optimization.RelaxBranches>
+  <avrgcc.common.outputfiles.hex>True</avrgcc.common.outputfiles.hex>
+  <avrgcc.common.outputfiles.lss>True</avrgcc.common.outputfiles.lss>
+  <avrgcc.common.outputfiles.eep>True</avrgcc.common.outputfiles.eep>
+  <avrgcc.common.outputfiles.srec>True</avrgcc.common.outputfiles.srec>
+  <avrgcc.common.outputfiles.usersignatures>False</avrgcc.common.outputfiles.usersignatures>
+  <avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>True</avrgcc.compiler.general.ChangeDefaultCharTypeUnsigned>
+  <avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>True</avrgcc.compiler.general.ChangeDefaultBitFieldUnsigned>
+  <avrgcc.compiler.symbols.DefSymbols>
+    <ListValues>
+      <Value>DEBUG</Value>
+    </ListValues>
+  </avrgcc.compiler.symbols.DefSymbols>
+  <avrgcc.compiler.optimization.level>Optimize (-O1)</avrgcc.compiler.optimization.level>
+  <avrgcc.compiler.optimization.PackStructureMembers>True</avrgcc.compiler.optimization.PackStructureMembers>
+  <avrgcc.compiler.optimization.AllocateBytesNeededForEnum>True</avrgcc.compiler.optimization.AllocateBytesNeededForEnum>
+  <avrgcc.compiler.optimization.DebugLevel>Default (-g2)</avrgcc.compiler.optimization.DebugLevel>
+  <avrgcc.compiler.warnings.AllWarnings>True</avrgcc.compiler.warnings.AllWarnings>
+  <avrgcc.linker.libraries.Libraries>
+    <ListValues>
+      <Value>libm</Value>
+    </ListValues>
+  </avrgcc.linker.libraries.Libraries>
+  <avrgcc.assembler.debugging.DebugLevel>Default (-Wa,-g)</avrgcc.assembler.debugging.DebugLevel>
+</AvrGcc>
+    </ToolchainSettings>
+  </PropertyGroup>
+  <ItemGroup>
+    <Compile Include="avr_compiler.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="DefinesAndMacros.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="InitFunctions.c">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="InitFunctions.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="PickAndPlaceDriverBoardRev2.0.c">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="Steppers.c">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="Steppers.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="SystemInputFunctions.c">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="SystemInputFunctions.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="TC_driver.c">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="TC_driver.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="TimerCounterFunctionsAndISR.h">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="usart_driver.c">
+      <SubType>compile</SubType>
+    </Compile>
+    <Compile Include="usart_driver.h">
+      <SubType>compile</SubType>
+    </Compile>
+  </ItemGroup>
+  <Import Project="$(AVRSTUDIO_EXE_PATH)\\Vs\\Compiler.targets" />
+</Project>

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/Steppers.c

@@ -0,0 +1,109 @@
+/*
+ * Steppers.c
+ *
+ * Created: 8/9/2014 1:10:47 PM
+ *  Author: corwin
+ */ 
+
+#include "Steppers.h"
+
+void enableSteppers()
+{
+	STEP_EN_CLR();
+	steppersEnabled = TRUE;
+	_delay_ms(100);
+}
+
+void disableSteppers()
+{
+	STEP_EN_SET();
+	steppersEnabled = FALSE;
+	_delay_ms(100);
+}
+
+void calibrateAllSteppers()
+{
+	ZAxis.desiredPosition = 40;														//Set position for the pipette to be up initially so it doesn't get broken on anything
+	ZAxis.shouldMove = TRUE;														//Allow axis to move
+	while(ZAxis.shouldMove);														//Wait for the pipette to come up before continuing
+	
+	homeYStepper();																	//Home the y axis against the limit switch
+	homeXStepper();																	//Home the x axis against the limit switch
+	_delay_ms(100);
+	
+	XAxis.desiredPosition = 47.5;														//Set x position to z calibration point
+	YAxis.desiredPosition = 36.5;													//Move y position to z calibration point
+	XAxis.shouldMove = TRUE;														//Allow axis to move
+	YAxis.shouldMove = TRUE;														//Allow axis to move
+	while(YAxis.shouldMove || XAxis.shouldMove);									//Don't continue until calibration point has been reached
+	
+	homeZStepper();																	//Home the z axis against the limit switch
+	setStepsOffset(&ZAxis);															//Re-align z steps to account for switch offset
+}
+
+void homeAllSteppers()
+{
+	
+	ZAxis.desiredPosition = 40;														//Set position for the pipette to be up initially so it doesn't get broken on anything
+	ZAxis.shouldMove = TRUE;														//Allow axis to move
+	while(ZAxis.shouldMove);														//Wait for the pipette to come up before continuing
+	
+	homeYStepper();																	//Home the y axis against the limit switch
+	homeXStepper();																	//Home the x axis against the limit switch
+	
+}
+
+void homeXStepper()
+{
+	X_DIR_CLR();
+	while(X_LIM_LEFT_GET()){
+		X_STEP_SET();
+		_delay_us(2);
+		X_STEP_CLR();
+		_delay_us(400);
+	}
+	XAxis.steps = 0;
+}
+
+void homeYStepper()
+{
+	Y_DIR_SET();
+	while(Y_LIM_FORW_GET()){
+		Y_STEP_SET();
+		_delay_us(2);
+		Y_STEP_CLR();
+		_delay_us(400);
+	}
+	YAxis.steps = 0;
+}
+
+void homeZStepper()
+{
+	Z_DIR_SET();
+	while(Z_LIM_DOWN_GET()){
+		Z_STEP_SET();
+		_delay_us(2);
+		Z_STEP_CLR();
+		_delay_us(400);
+	}
+	ZAxis.steps = 0;
+	ZAxis.desiredPosition = 30;
+	ZAxis.shouldMove = TRUE;
+	while(ZAxis.shouldMove);
+}
+
+void homeAStepper()
+{
+	
+}
+
+double getAxisPosition(Axes_t *axis)
+{
+	return (axis->steps/axis->stepsPerMM);
+}
+
+void setStepsOffset(Axes_t *axis)
+{
+	axis->steps = (axis->steps + (axis->mmFromZero * axis->stepsPerMM));
+}
+

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/Steppers.h

@@ -0,0 +1,74 @@
+/*
+ * Steppers.h
+ *
+ * Created: 8/9/2014 1:10:58 PM
+ *  Author: corwin
+ */ 
+
+
+#ifndef STEPPERS_H_
+#define STEPPERS_H_
+
+#define  F_CPU 32000000UL
+
+#include <avr/io.h>
+#include <util/delay.h>
+
+#include "DefinesAndMacros.h"
+
+#define XLEFT		0
+#define XRIGHT		1
+#define YFORWARDS	1
+#define YBACKWARDS	0
+#define ZUP			0
+#define ZDOWN		1
+
+#define XSTEPPERMM  250
+#define YSTEPERMM   250
+#define ZSTEPPERMM	323
+#define ASTEPPERMM  250	//Needs to be found
+
+typedef struct Axes{
+	PORT_t *dirPort;
+	int dirPin;
+	
+	PORT_t *stepPort;
+	int stepPin;
+	
+	char directionReversed;
+	char inManualMode;
+	
+	int stepsPerMM;
+	double mmFromZero;
+	double acceptableError;
+	
+	volatile long long steps;
+	volatile double desiredPosition;
+	
+	volatile char shouldMove;
+		
+}Axes_t;
+
+Axes_t XAxis;
+Axes_t YAxis;
+Axes_t ZAxis;
+Axes_t AAxis;
+
+char steppersEnabled;
+
+void enableSteppers();
+void disableSteppers();
+
+void calibrateAllSteppers();
+void homeAllSteppers();
+
+void homeXStepper();
+void homeYStepper();
+void homeZStepper();
+void homeAStepper();
+
+double getAxisPosition(Axes_t *axis);
+
+void setStepsOffset(Axes_t *axis);
+
+#endif /* STEPPERS_H_ */

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/SystemInputFunctions.c

@@ -0,0 +1,8 @@
+/*
+ * SystemInputFunctions.c
+ *
+ * Created: 8/12/2014 3:31:50 PM
+ *  Author: corwin
+ */ 
+
+#include "SystemInputFunctions.h"

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/SystemInputFunctions.h

@@ -0,0 +1,23 @@
+/*
+ * SystemInputFunctions.h
+ *
+ * Created: 8/12/2014 3:32:03 PM
+ *  Author: corwin
+ */ 
+
+
+#ifndef SYSTEMINPUTFUNCTIONS_H_
+#define SYSTEMINPUTFUNCTIONS_H_
+
+
+typedef struct ButtonStates{
+	volatile char estopPressed;
+	volatile char startPressed;
+	volatile char stopPressed;
+	volatile char homePressed;
+	volatile char calibratePressed;
+}ButtonStates_t;
+ 
+ButtonStates_t btnState;
+
+#endif /* SYSTEMINPUTFUNCTIONS_H_ */

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/TC_driver.c

@@ -0,0 +1,433 @@
+/* This file has been prepared for Doxygen automatic documentation generation.*/
+/*! \file *********************************************************************
+ *
+ * \brief  XMEGA Timer/Counter driver source file.
+ *
+ *      This file contains the function implementations the XMEGA Timer/Counter
+ *      driver.
+ *
+ *      The driver is not intended for size and/or speed critical code, since
+ *      most functions are just a few lines of code, and the function call
+ *      overhead would decrease code performance. The driver is intended for
+ *      rapid prototyping and documentation purposes for getting started with
+ *      the XMEGA Timer/Counter module.
+ *
+ *      For size and/or speed critical code, it is recommended to copy the
+ *      function contents directly into your application instead of making
+ *      a function call.
+ *
+ *      Several functions use the following construct:
+ *          "some_register = ... | (some_parameter ? SOME_BIT_bm : 0) | ..."
+ *      Although the use of the ternary operator ( if ? then : else ) is discouraged,
+ *      in some occasions the operator makes it possible to write pretty clean and
+ *      neat code. In this driver, the construct is used to set or not set a
+ *      configuration bit based on a boolean input parameter, such as
+ *      the "some_parameter" in the example above.
+ *
+ * \par Application note:
+ *      AVR1306: Using the XMEGA Timer/Counter
+ *
+ * \par Documentation
+ *      For comprehensive code documentation, supported compilers, compiler
+ *      settings and supported devices see readme.html
+ *
+ * \author
+ *      Atmel Corporation: http://www.atmel.com \n
+ *      Support email: avr@atmel.com
+ *
+ * $Revision: 1569 $
+ * $Date: 2008-04-22 13:03:43 +0200 (ti, 22 apr 2008) $  \n
+ *
+ * Copyright (c) 2008, Atmel Corporation All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ *
+ * 1. Redistributions of source code must retain the above copyright notice,
+ * this list of conditions and the following disclaimer.
+ *
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ * this list of conditions and the following disclaimer in the documentation
+ * and/or other materials provided with the distribution.
+ *
+ * 3. The name of ATMEL may not be used to endorse or promote products derived
+ * from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY ATMEL "AS IS" AND ANY EXPRESS OR IMPLIED
+ * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE EXPRESSLY AND
+ * SPECIFICALLY DISCLAIMED. IN NO EVENT SHALL ATMEL BE LIABLE FOR ANY DIRECT,
+ * INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ *****************************************************************************/
+
+#include "avr_compiler.h"
+#include "TC_driver.h"
+
+/*! \brief Configures clock source for the Timer/Counter 0.
+ *
+ *  This function clears the old clock source setting of the Timer/Counter and
+ *  sets a new clock source according to the clockSelection parameter.
+ *
+ *  \param tc              Timer/Counter module instance.
+ *  \param clockSelection  Timer/Counter clock source setting.
+ */
+void TC0_ConfigClockSource( volatile TC0_t * tc, TC_CLKSEL_t clockSelection )
+{
+	tc->CTRLA = ( tc->CTRLA & ~TC0_CLKSEL_gm ) | clockSelection;
+}
+
+/*! \brief Configures clock source for the Timer/Counter 1.
+ *
+ *  This function clears the old clock source setting of the Timer/Counter and
+ *  sets a new clock source according to the clockSelection parameter.
+ *
+ *  \param tc              Timer/Counter module instance.
+ *  \param clockSelection  Timer/Counter clock source setting.
+ */
+void TC1_ConfigClockSource( volatile TC1_t * tc, TC_CLKSEL_t clockSelection )
+{
+	tc->CTRLA = ( tc->CTRLA & ~TC1_CLKSEL_gm ) | clockSelection;
+}
+
+
+/*! \brief Configures the Waveform Generation Mode for the Timer/Counter 0.
+ *
+ *  This function clears the old WGM setting of the Timer/Counter and sets a
+ *  new WGM setting according to the wgm parameter.
+ *
+ *  \param tc    Timer/Counter module instance.
+ *  \param wgm   Waveform generation mode.
+ */
+void TC0_ConfigWGM( volatile TC0_t * tc, TC_WGMODE_t wgm )
+{
+	tc->CTRLB = ( tc->CTRLB & ~TC0_WGMODE_gm ) | wgm;
+}
+
+
+/*! \brief Configures the Waveform Generation Mode for the Timer/Counter 1.
+ *
+ *  This function clears the old WGM setting of the Timer/Counter and sets a
+ *  new WGM setting according to the wgm parameter.
+ *
+ *  \param tc    Timer/Counter module instance.
+ *  \param wgm   Waveform generation mode.
+ */
+void TC1_ConfigWGM( volatile TC1_t * tc, TC_WGMODE_t wgm )
+{
+	tc->CTRLB = ( tc->CTRLB & ~TC1_WGMODE_gm ) | wgm;
+}
+
+
+/*! \brief Configures the Timer/Counter 0 for input capture operation.
+ *
+ *  This function sets the Timer/Counter in input capture mode and selects
+ *  the event lines that will trigger the individual input capture channels.
+ *
+ *  \note Output compare operation is disabled when input capture operation is
+ *  enabled.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param eventSource      Event source selection.
+ */
+void TC0_ConfigInputCapture( volatile TC0_t * tc, TC_EVSEL_t eventSource )
+{
+	tc->CTRLD = ( tc->CTRLD & ~( TC0_EVSEL_gm | TC0_EVACT_gm ) ) |
+	            eventSource |
+	            TC_EVACT_CAPT_gc;
+}
+
+
+/*! \brief Configures the Timer/Counter 1 for input capture operation.
+ *
+ *  This function sets the Timer/Counter in input capture mode and selects
+ *  the event lines that will trigger the individual input capture channels.
+ *
+ *  \note Output compare operation is disabled when input capture operation is
+ *  enabled.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param eventSource      Event source selection.
+ */
+void TC1_ConfigInputCapture( volatile TC1_t * tc, TC_EVSEL_t eventSource )
+{
+	tc->CTRLD = ( tc->CTRLD & ~( TC1_EVSEL_gm | TC1_EVACT_gm ) ) |
+	            eventSource |
+	            TC_EVACT_CAPT_gc;
+}
+
+
+/*! \brief Enables compare/capture channels for Timer/Counter 0.
+ *
+ *  This function enables compare/capture channels according to the supplied
+ *  enableMask. The enableMask can be obtained by ORing together the symbols
+ *    - TC0_CCAEN_bm
+ *    - TC0_CCBEN_bm
+ *    - TC0_CCCEN_bm
+ *    - TC0_CCDEN_bm
+ *
+ *  Example: TC0_EnableCCChannels( &TCC0, TC0_CCAEN_bm | TC0_CCCEN_bm ) will
+ *  enable channels A and C.
+ *
+ *  \note No capture/compare channels are disabled by calling this function.
+ *  Disabling is done by calling \ref TC0_DisableCCChannels.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param enableMask       Mask of channels to enable.
+ */
+void TC0_EnableCCChannels( volatile TC0_t * tc, uint8_t enableMask )
+{
+	/* Make sure only CCxEN bits are set in enableMask. */
+	enableMask &= ( TC0_CCAEN_bm | TC0_CCBEN_bm | TC0_CCCEN_bm | TC0_CCDEN_bm );
+
+	/* Enable channels. */
+	tc->CTRLB |= enableMask;
+}
+
+/*! \brief Enables compare/capture channels for Timer/Counter 1.
+ *
+ *  This function enables compare/capture channels according to the supplied
+ *  enableMask. The enableMask can be obtained by ORing together the symbols
+ *    - TC1_CCAEN_bm
+ *    - TC1_CCBEN_bm
+ *
+ *  Example: TC1_EnableCCChannels( &TCC1, TC1_CCAEN_bm | TC1_CCBEN_bm ) will
+ *  enable channels A and B.
+ *
+ *  \note No capture/compare channels are disabled by calling this function.
+ *  Disabling is done by calling \ref TC1_DisableCCChannels.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param enableMask       Mask of channels to enable.
+ */
+void TC1_EnableCCChannels( volatile TC1_t * tc, uint8_t enableMask )
+{
+	/* Make sure only CCxEN bits are set in enableMask. */
+	enableMask &= ( TC1_CCAEN_bm | TC1_CCBEN_bm );
+
+	/* Enable channels. */
+	tc->CTRLB |= enableMask;
+}
+
+
+/*! \brief Disables compare/capture channels on Timer/Counter 0.
+ *
+ *  This function disables compare/capture channels according to the supplied
+ *  disableMask. The disableMask can be obtained by ORing together the symbols
+ *    - TC0_CCAEN_bm
+ *    - TC0_CCBEN_bm
+ *    - TC0_CCCEN_bm
+ *    - TC0_CCDEN_bm
+ *
+ *  Example: TC0_DisableCCChannels( &TCC0, TC0_CCAEN_bm | TC0_CCCEN_bm ) will
+ *  disable channels A and C.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param disableMask      Mask of channels to disable.
+ */
+void TC0_DisableCCChannels( volatile TC0_t * tc, uint8_t disableMask )
+{
+	/* Make sure only CCxEN bits are set in disableMask. */
+	disableMask &= ( TC0_CCAEN_bm | TC0_CCBEN_bm | TC0_CCCEN_bm | TC0_CCDEN_bm );
+
+	/* Disable channels. */
+	tc->CTRLB &= ~disableMask;
+}
+
+
+/*! \brief Disables compare/capture channels on Timer/Counter 1.
+ *
+ *  This function disables compare/capture channels according to the supplied
+ *  disableMask. The disableMask can be obtained by ORing together the symbols
+ *    - TC1_CCAEN_bm
+ *    - TC1_CCBEN_bm
+ *
+ *  Example: TC1_DisableCCChannels( &TCC1, TC1_CCAEN_bm | TC1_CCBEN_bm ) will
+ *  disable channels A and B.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param disableMask      Mask of channels to disable.
+ */
+void TC1_DisableCCChannels( volatile TC1_t * tc, uint8_t disableMask )
+{
+	/* Make sure only CCxEN bits are set in disableMask. */
+	disableMask &= ( TC1_CCAEN_bm | TC1_CCBEN_bm );
+
+	/* Disable channels. */
+	tc->CTRLB &= ~disableMask;
+}
+
+/*! \brief Sets the overflow interrupt level.
+ *
+ *  This function sets the overflow interrupt level of this Timer/Counter 0.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New overflow interrupt level.
+ */
+void TC0_SetOverflowIntLevel( volatile TC0_t * tc, TC_OVFINTLVL_t intLevel )
+{
+	tc->INTCTRLA = ( tc->INTCTRLA & ~TC0_OVFINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the overflow interrupt level.
+ *
+ *  This function sets the overflow interrupt level of this Timer/Counter 1.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New overflow interrupt level.
+ */
+void TC1_SetOverflowIntLevel( volatile TC1_t * tc, TC_OVFINTLVL_t intLevel )
+{
+	tc->INTCTRLA = ( tc->INTCTRLA & ~TC1_OVFINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the Error interrupt level.
+ *
+ *  This function sets the overflow interrupt level of this Timer/Counter 0.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New error interrupt level.
+ */
+void TC0_SetErrorIntLevel( volatile TC0_t * tc, TC_ERRINTLVL_t intLevel )
+{
+	tc->INTCTRLA = ( tc->INTCTRLA & ~TC0_ERRINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the Error interrupt level.
+ *
+ *  This function sets the overflow interrupt level of this Timer/Counter 1.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New error interrupt level.
+ */
+void TC1_SetErrorIntLevel( volatile TC1_t * tc, TC_ERRINTLVL_t intLevel )
+{
+	tc->INTCTRLA = ( tc->INTCTRLA & ~TC1_ERRINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the interrupt level for compare/capture channel A interrupt.
+ *
+ *  This function sets the interrupt level for compare/capture channel A
+ *  interrupt in Timer/Counter 0.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New compare/capture channel A interrupt level.
+ */
+void TC0_SetCCAIntLevel( volatile TC0_t * tc, TC_CCAINTLVL_t intLevel )
+{
+	tc->INTCTRLB = ( tc->INTCTRLB & ~TC0_CCAINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the interrupt level for compare/capture channel A interrupt.
+ *
+ *  This function sets the interrupt level for compare/capture channel A
+ *  interrupt in Timer/Counter 1.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New compare/capture channel A interrupt level.
+ */
+void TC1_SetCCAIntLevel( volatile TC1_t * tc, TC_CCAINTLVL_t intLevel )
+{
+	tc->INTCTRLB = ( tc->INTCTRLB & ~TC1_CCAINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the interrupt level for compare/capture channel B interrupt.
+ *
+ *  This function sets the interrupt level for compare/capture channel B
+ *  interrupt in Timer/Counter 0.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New compare/capture channel B interrupt level.
+ */
+void TC0_SetCCBIntLevel( volatile TC0_t * tc, TC_CCBINTLVL_t intLevel )
+{
+	tc->INTCTRLB = ( tc->INTCTRLB & ~TC0_CCBINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the interrupt level for compare/capture channel B interrupt.
+ *
+ *  This function sets the interrupt level for compare/capture channel B
+ *  interrupt in Timer/Counter 1.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New compare/capture channel B interrupt level.
+ */
+void TC1_SetCCBIntLevel( volatile TC1_t * tc, TC_CCBINTLVL_t intLevel )
+{
+	tc->INTCTRLB = ( tc->INTCTRLB & ~TC1_CCBINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the interrupt level for compare/capture channel C interrupt.
+ *
+ *  This function sets the interrupt level for compare/capture channel C
+ *  interrupt in Timer/Counter 0.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New compare/capture channel A interrupt level.
+ */
+void TC0_SetCCCIntLevel( volatile TC0_t * tc, TC_CCCINTLVL_t intLevel )
+{
+	tc->INTCTRLB = ( tc->INTCTRLB & ~TC0_CCCINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Sets the interrupt level for compare/capture channel D interrupt.
+ *
+ *  This function sets the interrupt level for compare/capture channel D
+ *  interrupt in Timer/Counter 0.
+ *
+ *  \param tc               Timer/Counter module instance.
+ *  \param intLevel         New compare/capture channel A interrupt level.
+ */
+void TC0_SetCCDIntLevel( volatile TC0_t * tc, TC_CCDINTLVL_t intLevel )
+{
+	tc->INTCTRLB = ( tc->INTCTRLB & ~TC0_CCDINTLVL_gm ) | intLevel;
+}
+
+
+/*! \brief Resets the Timer/Counter 0.
+ *
+ *  This function will reset the Timer/Counter. After calling this function,
+ *  the Timer/Counter will be in the same state as it would after a full
+ *  reset of the device.
+ *
+ *  \param tc  Timer/Counter 0 module instance.
+ */
+void TC0_Reset( volatile TC0_t * tc )
+{
+	/* TC must be turned off before a Reset command. */
+	tc->CTRLA = ( tc->CTRLA & ~TC0_CLKSEL_gm ) | TC_CLKSEL_OFF_gc;
+
+	/* Issue Reset command. */
+	tc->CTRLFSET = TC_CMD_RESET_gc;
+}
+
+
+/*! \brief Resets the Timer/Counter 1.
+ *
+ *  This function will reset the Timer/Counter. After calling this function,
+ *  the Timer/Counter will be in the same state as it would after a full
+ *  reset of the device.
+ *
+ *  \param tc  Timer/Counter 1 module instance.
+ */
+void TC1_Reset( volatile TC1_t * tc )
+{
+	/* TC must be turned off before a Reset command. */
+	tc->CTRLA = ( tc->CTRLA & ~TC1_CLKSEL_gm ) | TC_CLKSEL_OFF_gc;
+
+	/* Issue Reset command. */
+	tc->CTRLFSET = TC_CMD_RESET_gc;
+}

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/TC_driver.h

@@ -0,0 +1,423 @@
+/* This file has been prepared for Doxygen automatic documentation generation.*/
+/*! \file *********************************************************************
+ *
+ * \brief  XMEGA Timer/Counter driver header file.
+ *
+ *      This file contains the function prototypes and enumerator definitions
+ *      for various configuration parameters for the XMEGA Timer/Counter driver.
+ *
+ *      The driver is not intended for size and/or speed critical code, since
+ *      most functions are just a few lines of code, and the function call
+ *      overhead would decrease code performance. The driver is intended for
+ *      rapid prototyping and documentation purposes for getting started with
+ *      the XMEGA Timer/Counter module.
+ *
+ *      For size and/or speed critical code, it is recommended to copy the
+ *      function contents directly into your application instead of making
+ *      a function call.
+ *
+ * \par Application note:
+ *      AVR1306: Using the XMEGA Timer/Counter
+ *
+ * \par Documentation
+ *      For comprehensive code documentation, supported compilers, compiler
+ *      settings and supported devices see readme.html
+ *
+ * \author
+ *      Atmel Corporation: http://www.atmel.com \n
+ *      Support email: avr@atmel.com
+ *
+ * $Revision: 1569 $
+ * $Date: 2008-04-22 13:03:43 +0200 (ti, 22 apr 2008) $  \n
+ *
+ * Copyright (c) 2008, Atmel Corporation All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ *
+ * 1. Redistributions of source code must retain the above copyright notice,
+ * this list of conditions and the following disclaimer.
+ *
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ * this list of conditions and the following disclaimer in the documentation
+ * and/or other materials provided with the distribution.
+ *
+ * 3. The name of ATMEL may not be used to endorse or promote products derived
+ * from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY ATMEL "AS IS" AND ANY EXPRESS OR IMPLIED
+ * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE EXPRESSLY AND
+ * SPECIFICALLY DISCLAIMED. IN NO EVENT SHALL ATMEL BE LIABLE FOR ANY DIRECT,
+ * INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ *****************************************************************************/
+#ifndef TC_DRIVER_H
+#define TC_DRIVER_H
+
+#include "avr_compiler.h"
+
+/* Definition of macros. */
+
+/*! \brief Enables the event delay for this TC.
+ *
+ *  This macro enables a one clock cycle delay of event sources for this TC.
+ *  Mainly used for the high word TC when two TCs are cascaded to form a 32-bit
+ *  TC.
+ *
+ *  \param _tc  The Timer/Counter to enable delay on.
+ */
+#define TC_EnableEventDelay( _tc )  ( (_tc)->CTRLD |= TC0_EVDLY_bm )
+
+/*! \brief  This macro disables the event delay for this TC.
+ *
+ *  \param _tc  The Timer/Counter to disable delay on.
+ */
+#define TC_DisableEventDelay( _tc ) ( (_tc)->CTRLD &= ~TC0_EVDLY_bm )
+
+/*! \brief Locks automatic updating of compare and period registers.
+ *
+ *  This macro will lock automatic updates of compare registers from the
+ *  corresponding buffer registers. To enable automatic updates again, use the
+ *  \ref TC_UnlockCompareUpdate macro.
+ *
+ *  \param _tc  Timer/Counter module instance.
+ */
+#define TC_LockCompareUpdate( _tc ) ( (_tc)->CTRLFSET = TC0_LUPD_bm )
+
+/*! \brief Unlocks automatic updating of compare and period registers.
+ *
+ *  This macro will unlock automatic updates of compare registers from the
+ *  corresponding buffer registers. Note that the output compare registers will
+ *  not be updated until an update event occurs, e.g. that the counter hits
+ *  TOP or BOTTOM. To force an update of the compare register from the buffer
+ *  register, use the \ref TC_ForceUpdate macro.
+ *
+ *  \param _tc               Timer/Counter module instance.
+ */
+#define TC_UnlockCompareUpdate( _tc ) ( (_tc)->CTRLFCLR = TC0_LUPD_bm )
+
+
+/*! \brief Force an update of the output compare and period registers.
+ *
+ *  This macro will trigger a transfer from the output compare and period
+ *  buffer registers ( CCxBUF and PERBUF ) to the output compare and period
+ *  registers ( CCx and PER ). Calling this macro has the same effect as an
+ *  update condition.
+ *
+ *  \param _tc    Timer/Counter module instance.
+ */
+#define TC_ForceUpdate( _tc ) ( (_tc)->CTRLFSET = TC_CMD_UPDATE_gc )
+
+/*! \brief Restart the Timer/Counter.
+ *
+ *  This macro will restart the timer. The effect of running this command is:
+ *    - The CNT[H:L] register is cleared.
+ *    - The direction (DIR ) is reset. (Next clock cycle will increase the counter )
+ *    - All compare outputs are set to 0.
+ *    - If a DTI module is connected to the timer, it will be reset as well.
+ *
+ *  \param _tc    Timer/Counter module instance.
+ */
+#define TC_Restart( _tc ) ( (_tc)->CTRLFSET = TC_CMD_RESTART_gc )
+
+/*! \brief Manually set the count.
+ *
+ *  This macro writes a new value to the CNT[H:L] register.
+ *  Note that the CNT[H:L] register is not double buffered, so it is recommended
+ *  that the timer is not running when this macro is used.
+ *
+ *  \param _tc               Timer/Counter module instance.
+ *  \param _count            New count value.
+ */
+#define TC_SetCount( _tc, _count ) ( (_tc)->CNT = (_count) )
+
+/*! \brief Sets the timer period.
+ *
+ *  This macro sets a new timer period. The period buffer register is not
+ *  used, so the new period will be valid immediately after the 16-bit write
+ *  is finished.
+ *
+ *  \param _tc               Timer/Counter module instance.
+ *  \param _period           New Timer/Counter period.
+ */
+#define TC_SetPeriod( _tc, _period ) ( (_tc)->PER = (_period) )
+
+/*! \brief Sets the timer period ( double buffered ).
+ *
+ *  This macro sets a new timer period. The period buffer register is used,
+ *  so the new period will be valid after the next update condition.
+ *
+ *  \param _tc               Timer/Counter 0 or 1 module instance.
+ *  \param _period           New Timer/Counter period.
+ */
+#define TC_SetPeriodBuffered( _tc, _period ) ( (_tc)->PERBUF = (_period) )
+
+/*! \brief Set new compare value for compare channel A. ( Double buffered )
+ *
+ *  This macro sets a new compare value for compare channel A. The compare
+ *  channel A buffer register is used, so the new period will be valid from the
+ *  next update condition.
+ *
+ *  \param _tc               Timer/Counter 0 or 1 module instance.
+ *  \param _compareValue     New compare value for compare channel A.
+ */
+#define TC_SetCompareA( _tc, _compareValue ) ( (_tc)->CCABUF = (_compareValue) )
+
+/*! \brief Set new compare value for compare channel B. ( Double buffered )
+ *
+ *  This macro sets a new compare value for compare channel B. The compare
+ *  channel B buffer register is used, so the new period will be valid from the
+ *  next update condition.
+ *
+ *  \param _tc               Timer/Counter 0 or 1 module instance.
+ *  \param _compareValue     New compare value for compare channel B.
+ */
+#define TC_SetCompareB( _tc, _compareValue ) ( (_tc)->CCBBUF = (_compareValue) )
+
+/*! \brief Set new compare value for compare channel C. ( Double buffered )
+ *
+ *  This macro sets a new compare value for compare channel C. The compare
+ *  channel C buffer register is used, so the new period will be valid from the
+ *  next update condition.
+ *
+ *  \note The CCC channel is not available on TCx1.
+ *
+ *  \param _tc               Timer/Counter 0 module instance.
+ *  \param _compareValue     New compare value for compare channel C.
+ */
+#define TC_SetCompareC( _tc, _compareValue ) ( (_tc)->CCCBUF = (_compareValue) )
+
+/*! \brief Set new compare value for compare channel D. ( Double buffered )
+ *
+ *  This macro sets a new compare value for compare channel D. The compare
+ *  channel D buffer register is used, so the new period will be valid from the
+ *  next update condition.
+ *
+ *  \note The CCD channel is not available on TCx1.
+ *
+ *  \param _tc               Timer/Counter 0 module instance.
+ *  \param _compareValue     New compare value for compare channel D.
+ */
+#define TC_SetCompareD( _tc, _compareValue ) ( (_tc)->CCDBUF = (_compareValue) )
+
+/*! \brief Test whether an overflow has occurred.
+ *
+ *  The return value of this macro indicates if an overflow has occurred.
+ *
+ *  \param  _tc Timer/Counter module instance.
+ *
+ *  \return Non-zero if overflow flag is set, zero otherwise.
+ */
+#define TC_GetOverflowFlag( _tc ) ( (_tc)->INTFLAGS & TC0_OVFIF_bm )
+
+/*! \brief Clears the Timer/Counter overflow flag.
+ *
+ *   This macro clears the Timer/Counter overflow flag.
+ *
+ *  \param _tc  Timer/Counter module instance.
+ */
+#define TC_ClearOverflowFlag( _tc ) ( (_tc)->INTFLAGS = TC0_OVFIF_bm )
+
+/*! \brief Test whether an error has occurred.
+ *
+ *  The return value of this macro indicates if an error has occurred.
+ *
+ *  \param _tc  Timer/Counter module instance.
+ *
+ *  \return Non-zero if the Timer error flag is set.
+ */
+#define TC_GetErrorFlag( _tc ) ( (_tc)->INTFLAGS & TC0_ERRIF_bm )
+
+/*! \brief Clears the Timer/Counter error flag.
+ *
+ *   This macro clears the Timer/Counter error flag.
+ *
+ *  \param _tc  Timer/Counter module instance.
+ */
+#define TC_ClearErrorFlag( _tc ) ( (_tc)->INTFLAGS = TC0_ERRIF_bm )
+
+/*! \brief Get the status for Compare or Capture channel A.
+ *
+ *  When the TC is in Input Capture mode, the return value of this macro
+ *  indicates whether there is an unread input capture value available for
+ *  capture channel A.
+ *
+ *  When the TC is in any other mode, the return value of this macro
+ *  indicates whether there has been a compare match between channel A and the
+ *  counter.
+ *
+ *  \param _tc  Timer/Counter 0 or 1 module instance.
+ *
+ *  \return Non-zero if Compare or capture has occured, zero otherwise.
+ */
+#define TC_GetCCAFlag( _tc ) ( (_tc)->INTFLAGS & TC0_CCAIF_bm )
+
+/*! \brief Clears the Timer/Counter compare or capture A interrupt flag.
+ *
+ *  \param _tc   Timer/Counter 0 or 1 module instance.
+ */
+#define TC_ClearCCAFlag( _tc ) ( (_tc)->INTFLAGS = TC0_CCAIF_bm )
+
+/*! \brief Get the status for Compare or Capture channel B.
+ *
+ *  When the TC is in Input Capture mode, the return value of this macro
+ *  indicates whether there is an unread input capture value available for
+ *  capture channel B.
+ *
+ *  When the TC is in any other mode, the return value of this macro
+ *  indicates whether there has been a compare match between channel B and the
+ *  counter.
+ *
+ *  \param _tc   Timer/Counter 0 or 1 module instance.
+ *
+ *  \return Non-zero if Compare or capture has occured, zero otherwise.
+ */
+#define TC_GetCCBFlag( _tc ) ( (_tc)->INTFLAGS & TC0_CCBIF_bm )
+
+/*! \brief Clears the Timer/Counter compare or capture B interrupt flag.
+ *
+ *  \param _tc   Timer/Counter 0 or 1 module instance.
+ */
+#define TC_ClearCCBFlag( _tc ) ( (_tc)->INTFLAGS = TC0_CCBIF_bm )
+
+/*! \brief Get the status for Compare or Capture channel C.
+ *
+ *  When the TC is in Input Capture mode, the return value of this macro
+ *  indicates whether there is an unread input capture value available for
+ *  capture channel C.
+ *
+ *  When the TC is in any other mode, the return value of this macro
+ *  indicates whether there has been a compare match between channel C and the
+ *  counter.
+ *
+ *  \note The CCC channel is not available on TCx1.
+ *
+ *  \param _tc    Timer/Counter 0 module instance.
+ *
+ *  \return       Non-zero if Compare or capture has occured, zero otherwise.
+ */
+#define TC_GetCCCFlag( _tc ) ( (_tc)->INTFLAGS & TC0_CCCIF_bm )
+
+/*! \brief Clears the Timer/Counter compare or capture C interrupt flag.
+ *
+ *   This macro clears the Timer/Counter compare or capture C interrupt flag.
+ *
+ *  \note The CCC channel is not available on TCx1.
+ *
+ *  \param _tc   Timer/Counter 0 module instance.
+ */
+#define TC_ClearCCCFlag( _tc ) ( (_tc)->INTFLAGS = TC0_CCCIF_bm )
+
+/*! \brief Get the status for Compare or Capture channel D.
+ *
+ *  When the TC is in Input Capture mode, the return value of this macro
+ *  indicates whether there is an unread input capture value available for
+ *  capture channel D.
+ *
+ *  When the TC is in any other mode, the return value of this macro
+ *  indicates whether there has been a compare match between channel D and the
+ *  counter.
+ *
+ *  \note The CCD channel is not available on TCx1.
+ *
+ *  \param _tc    Timer/Counter 0 module instance.
+ *
+ *  \return       Non-zero if Compare or capture has occured, zero otherwise.
+ */
+#define TC_GetCCDFlag( _tc ) ( (_tc)->INTFLAGS & TC0_CCDIF_bm )
+
+/*! \brief Clears the Timer/Counter compare or capture D interrupt flag.
+ *
+ *   This macro clears the Timer/Counter compare or capture D interrupt flag.
+ *
+ *  \note The CCD channel is not available on TCx1.
+ *
+ *  \param _tc    Timer/Counter 0 module instance.
+ */
+#define TC_ClearCCDFlag( _tc ) ( (_tc)->INTFLAGS = TC0_CCDIF_bm )
+
+
+/*! \brief Reads the first available input capture value for channel A.
+ *
+ *  This macro returns the first available input capture value for
+ *  capture channel A.
+ *
+ *  \param _tc    Timer/Counter 0 or 1 module instance.
+ *
+ *  \return       The first available input capture value for channel A.
+ */
+#define TC_GetCaptureA( _tc ) ( (_tc)->CCA )
+
+/*! \brief Reads the first available input capture value for channel B.
+ *
+ *  This macro returns the first available input capture value for
+ *  capture channel B.
+ *
+ *  \param _tc    Timer/Counter 0 or 1 module instance.
+ *
+ *  \return       The first available input capture value for channel B.
+ */
+#define TC_GetCaptureB( _tc ) ( (_tc)->CCB )
+
+/*! \brief Reads the first available input capture value for channel C.
+ *
+ *  This macro returns the first available input capture value for
+ *  capture channel C.
+ *
+ *  \note The CCC channel is not available on TCx1.
+ *
+ *  \param _tc    Timer/Counter 0 module instance.
+ *
+ *  \return       The first available input capture value for channel C.
+ */
+#define TC_GetCaptureC( _tc ) ( (_tc)->CCC )
+
+/*! \brief Reads the first available input capture value for channel D.
+ *
+ *  This macro returns the first available input capture value for
+ *  capture channel D.
+ *
+ *  \note The CCD channel is not available on TCx1.
+ *
+ *  \param _tc    Timer/Counter 0 module instance.
+ *
+ *  \return       The first available input capture value for channel D.
+ */
+#define TC_GetCaptureD( _tc ) ( (_tc)->CCD )
+
+
+/* Prototyping of functions. Documentation can be found in source file. */
+
+void TC0_ConfigClockSource( volatile TC0_t * tc, TC_CLKSEL_t clockSelection );
+void TC0_ConfigWGM( volatile TC0_t * tc, TC_WGMODE_t wgm );
+void TC0_ConfigInputCapture( volatile TC0_t * tc, TC_EVSEL_t eventSource );
+void TC0_EnableCCChannels( volatile TC0_t * tc, uint8_t enableMask );
+void TC0_DisableCCChannels( volatile TC0_t * tc, uint8_t disableMask );
+void TC0_SetOverflowIntLevel( volatile TC0_t * tc, TC_OVFINTLVL_t intLevel );
+void TC0_SetErrorIntLevel( volatile TC0_t * tc, TC_ERRINTLVL_t intLevel );
+void TC0_SetCCAIntLevel( volatile TC0_t * tc, TC_CCAINTLVL_t intLevel );
+void TC0_SetCCBIntLevel( volatile TC0_t * tc, TC_CCBINTLVL_t intLevel );
+void TC0_SetCCCIntLevel( volatile TC0_t * tc, TC_CCCINTLVL_t intLevel );
+void TC0_SetCCDIntLevel( volatile TC0_t * tc, TC_CCDINTLVL_t intLevel );
+void TC0_Reset( volatile TC0_t * tc );
+
+void TC1_ConfigClockSource( volatile TC1_t * tc, TC_CLKSEL_t clockSelection );
+void TC1_ConfigWGM( volatile TC1_t * tc, TC_WGMODE_t wgm );
+void TC1_ConfigInputCapture( volatile TC1_t * tc, TC_EVSEL_t eventSource );
+void TC1_EnableCCChannels( volatile TC1_t * tc, uint8_t enableMask );
+void TC1_DisableCCChannels( volatile TC1_t * tc, uint8_t disableMask );
+void TC1_SetOverflowIntLevel( volatile TC1_t * tc, TC_OVFINTLVL_t intLevel );
+void TC1_SetErrorIntLevel( volatile TC1_t * tc, TC_ERRINTLVL_t intLevel );
+void TC1_SetCCAIntLevel( volatile TC1_t * tc, TC_CCAINTLVL_t intLevel );
+void TC1_SetCCBIntLevel( volatile TC1_t * tc, TC_CCBINTLVL_t intLevel );
+void TC1_SetCCCIntLevel( volatile TC1_t * tc, TC_CCCINTLVL_t intLevel );
+void TC1_SetCCDIntLevel( volatile TC1_t * tc, TC_CCDINTLVL_t intLevel );
+void TC1_Reset( volatile TC1_t * tc );
+
+
+#endif

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/TimerCounterFunctionsAndISR.h

@@ -0,0 +1,310 @@
+/*
+ * TimerCounterFunctionsAndISR.h
+ *
+ * Created: 8/12/2014 3:56:59 PM
+ *  Author: corwin
+ */ 
+
+
+#ifndef TIMERCOUNTERFUNCTIONSANDISR_H_
+#define TIMERCOUNTERFUNCTIONSANDISR_H_
+#include "DefinesAndMacros.h"
+#include "Steppers.h"
+#include "SystemInputFunctions.h"
+#include <stdlib.h>
+
+volatile long int CurrentTime = 0, PreviousTime = 0;
+volatile char secondCounter = 0;
+
+ISR(RTC_OVF_vect)
+{
+	secondCounter++;
+	if(secondCounter >= 100){
+		CurrentTime++;
+		if(CurrentTime == 0){
+			PreviousTime = 0;
+		}
+		secondCounter = 0;
+	}
+	
+	if((secondCounter % 25) == 0){
+		RDY_LED_TGL();
+	}
+	
+}
+
+ISR(TCC0_OVF_vect){
+	static double desiredPositionPrevious = 0, currentPosition = 0;
+	static double middlePosition = 0, middleOffset = 0, maxDiff = 0, scalar = 0;
+	static double axisDiff = 0;			  
+	static char doneOnce = FALSE;
+	
+	
+	
+	if(XAxis.shouldMove && steppersEnabled){
+		currentPosition = getAxisPosition(&XAxis);
+		
+		if(doneOnce == FALSE){
+			desiredPositionPrevious = currentPosition;
+			middlePosition = (((XAxis.desiredPosition-desiredPositionPrevious)/2) + desiredPositionPrevious);
+			maxDiff = abs(middlePosition - desiredPositionPrevious);
+			doneOnce = TRUE;
+		}
+		
+		axisDiff = (XAxis.desiredPosition - currentPosition);
+		if(XAxis.inManualMode == TRUE){
+			TCC0.PER = 14336;
+		}else{
+			middleOffset = abs(middlePosition - currentPosition);
+			if(middleOffset >= (((double)7*maxDiff)/10)){
+				double ratio = (maxDiff - (((double)7*maxDiff)/10));
+				double prescalar = (ratio-((double)maxDiff-middleOffset));
+				scalar = ((prescalar*10000)/ratio);
+				TCC0.PER = 5500+(int)scalar;
+			}
+		}
+
+		if(abs(axisDiff) <= XAxis.acceptableError){
+			XAxis.shouldMove = FALSE;
+			doneOnce = FALSE;
+		}else if(axisDiff > 0){
+			X_DIR_SET();
+			_delay_us(2);
+			X_STEP_SET();
+			_delay_us(2);
+			X_STEP_CLR();
+			XAxis.steps++;
+		}else if(axisDiff < 0){
+			if(X_LIM_LEFT_GET()){
+				X_DIR_CLR();
+				_delay_us(2);
+				X_STEP_SET();
+				_delay_us(2);
+				X_STEP_CLR();
+				XAxis.steps--;
+			}else{
+				XAxis.steps = 0;
+			}
+		}else{
+			ERR_LED_SET();
+			while(1);
+		}
+	}
+}
+
+ISR(TCD0_OVF_vect){
+	static double desiredPositionPrevious = 0, currentPosition = 0;
+	static double middlePosition = 0, middleOffset = 0, maxDiff = 0, scalar = 0;
+	static double axisDiff = 0;
+	static char doneOnce = FALSE;
+	
+	
+	
+	if(YAxis.shouldMove && steppersEnabled){
+		currentPosition = getAxisPosition(&YAxis);
+		
+		if(doneOnce == FALSE){
+			desiredPositionPrevious = currentPosition;
+			middlePosition = (((YAxis.desiredPosition-desiredPositionPrevious)/2) + desiredPositionPrevious);
+			maxDiff = abs(middlePosition - desiredPositionPrevious);
+			doneOnce = TRUE;
+		}
+		
+		axisDiff = (YAxis.desiredPosition - currentPosition);
+		if(YAxis.inManualMode == TRUE){
+			TCD0.PER = 10752;
+		}else{
+			middleOffset = abs(middlePosition - currentPosition);
+			if(middleOffset >= (((double)7*maxDiff)/10)){
+				double ratio = (maxDiff - (((double)7*maxDiff)/10));
+				double prescalar = (ratio-((double)maxDiff-middleOffset));
+				scalar = ((prescalar*10000)/ratio);
+				TCD0.PER = 5500+(int)scalar;
+			}
+		}
+		
+		if(abs(axisDiff) <= YAxis.acceptableError){
+			YAxis.shouldMove = FALSE;
+			doneOnce = FALSE;
+		}else if(axisDiff > 0){
+			Y_DIR_CLR();
+			_delay_us(2);
+			Y_STEP_SET();
+			_delay_us(2);
+			Y_STEP_CLR();
+			YAxis.steps++;
+		}else if(axisDiff < 0){
+			if(Y_LIM_FORW_GET()){
+				Y_DIR_SET();
+				_delay_us(2);
+				Y_STEP_SET();
+				_delay_us(2);
+				Y_STEP_CLR();
+				YAxis.steps--;
+			}else{
+				YAxis.steps = 0;
+			}
+		}else{
+			ERR_LED_SET();
+			while(1);
+		}
+	}
+}
+
+
+ISR(TCE0_OVF_vect){
+	static double desiredPositionPrevious = 0, currentPosition = 0;
+	static double middlePosition = 0, middleOffset = 0, maxDiff = 0, scalar = 0;
+	static double axisDiff = 0;
+	static char doneOnce = FALSE;
+	
+	
+	
+	if(ZAxis.shouldMove && steppersEnabled){
+		currentPosition = getAxisPosition(&ZAxis);
+		
+		if(doneOnce == FALSE){
+			desiredPositionPrevious = currentPosition;
+			middlePosition = (((ZAxis.desiredPosition-desiredPositionPrevious)/2) + desiredPositionPrevious);
+			maxDiff = abs(middlePosition - desiredPositionPrevious);
+			doneOnce = TRUE;
+		}
+		
+		axisDiff = (ZAxis.desiredPosition - currentPosition);
+		if(ZAxis.inManualMode == TRUE){
+			TCE0.PER = 10752;
+		}else{
+			middleOffset = abs(middlePosition - currentPosition);
+			if(middleOffset >= (((double)7*maxDiff)/10)){
+				double ratio = (maxDiff - (((double)7*maxDiff)/10));
+				double prescalar = (ratio-((double)maxDiff-middleOffset));
+				scalar = ((prescalar*4608)/ratio);
+				TCE0.PER = 2304+(int)scalar;
+			}
+		}
+		
+		if(abs(axisDiff) <= ZAxis.acceptableError){
+			ZAxis.shouldMove = FALSE;
+			doneOnce = FALSE;
+		}else if(axisDiff > 0){
+			Z_DIR_CLR();
+			_delay_us(2);
+			Z_STEP_SET();
+			_delay_us(2);
+			Z_STEP_CLR();
+			ZAxis.steps++;
+		}else if(axisDiff < 0){
+			Z_DIR_SET();
+			_delay_us(2);
+			Z_STEP_SET();
+			_delay_us(2);
+			Z_STEP_CLR();
+			ZAxis.steps--;
+		}else{
+			ERR_LED_SET();
+			while(1);
+		}
+	}
+}
+
+
+ISR(TCF0_OVF_vect){
+	static double desiredPositionPrevious = 0, currentPosition = 0;
+	static double middlePosition = 0, middleOffset = 0, maxDiff = 0, scalar = 0;
+	static double axisDiff = 0;
+	static char doneOnce = FALSE;
+	
+	
+	if(AAxis.shouldMove){
+		currentPosition = getAxisPosition(&AAxis);
+		
+		if(doneOnce == FALSE){
+			desiredPositionPrevious = currentPosition;
+			middlePosition = (((AAxis.desiredPosition-desiredPositionPrevious)/2) + desiredPositionPrevious);
+			maxDiff = abs(middlePosition - desiredPositionPrevious);
+			doneOnce = TRUE;
+		}
+		
+		axisDiff = (AAxis.desiredPosition - currentPosition);
+		if(AAxis.inManualMode == TRUE){
+			TCF0.PER = 10752;
+		}else{
+			middleOffset = abs(middlePosition - currentPosition);
+			scalar = (middleOffset*9216/maxDiff);
+			TCF0.PER = 4608+(int)scalar;
+		}
+		
+		if(abs(axisDiff) <= AAxis.acceptableError){
+			AAxis.shouldMove = FALSE;
+			doneOnce = FALSE;
+			}else if(axisDiff > 0){
+			A_DIR_SET();
+			_delay_us(2);
+			A_STEP_SET();
+			_delay_us(2);
+			A_STEP_CLR();
+			AAxis.steps++;
+			}else if(axisDiff < 0){
+			A_DIR_CLR();
+			_delay_us(2);
+			A_STEP_SET();
+			_delay_us(2);
+			A_STEP_CLR();
+			AAxis.steps--;
+			}else{
+			ERR_LED_SET();
+			while(1);
+		}
+	}
+}
+
+ISR(USARTC0_RXC_vect){
+	USART_RXComplete(&usartData);
+}
+
+
+ISR(USARTC0_DRE_vect){
+	USART_DataRegEmpty(&usartData);
+}
+
+ISR(PORTB_INT0_vect){
+	static long int debounceTimePrevious;
+	
+	if((CurrentTime - debounceTimePrevious) > 1){		
+		if(!SYS_HOME_GET()){
+			btnState.homePressed = TRUE;
+		}
+		
+		if(!SYS_CAL_GET()){
+			btnState.calibratePressed = TRUE;
+		}
+		
+		if(!SYS_START_GET()){
+			btnState.startPressed = TRUE;
+		}
+		debounceTimePrevious = CurrentTime;
+	}
+}
+
+ISR(PORTF_INT0_vect){
+	static long int debounceTimePrevious;
+	
+	if((CurrentTime - debounceTimePrevious) > 1){
+		
+		if(!ESTOP_GET()){
+			disableSteppers();
+			ERR_LED_SET();
+			
+			_delay_ms(5000);
+			
+			CCP = CCP_IOREG_gc;
+			RST.CTRL =  RST_SWRST_bm;
+		}
+
+		debounceTimePrevious = CurrentTime;
+	}	
+}
+
+
+
+#endif /* TIMERCOUNTERFUNCTIONSANDISR_H_ */

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/avr_compiler.h

@@ -0,0 +1,154 @@
+/* This file has been prepared for Doxygen automatic documentation generation.*/
+/*! \file *********************************************************************
+ *
+ * \brief This file implements some macros that makes the IAR C-compiler and
+ *        avr-gcc work with the same code base for the AVR architecture.
+ *
+ * \par Documentation
+ *      For comprehensive code documentation, supported compilers, compiler
+ *      settings and supported devices see readme.html
+ *
+ * \author
+ *      Atmel Corporation: http://www.atmel.com \n
+ *      Support email: avr@atmel.com
+ *
+ * $Revision: 1694 $
+ * $Date: 2008-07-29 14:21:58 +0200 (ti, 29 jul 2008) $  \n
+ *
+ * Copyright (c) 2008, Atmel Corporation All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ *
+ * 1. Redistributions of source code must retain the above copyright notice,
+ * this list of conditions and the following disclaimer.
+ *
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ * this list of conditions and the following disclaimer in the documentation
+ * and/or other materials provided with the distribution.
+ *
+ * 3. The name of ATMEL may not be used to endorse or promote products derived
+ * from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY ATMEL "AS IS" AND ANY EXPRESS OR IMPLIED
+ * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE EXPRESSLY AND
+ * SPECIFICALLY DISCLAIMED. IN NO EVENT SHALL ATMEL BE LIABLE FOR ANY DIRECT,
+ * INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ ******************************************************************************/
+
+#ifndef COMPILER_AVR_H
+#define COMPILER_AVR_H
+
+#ifndef F_CPU
+/*! \brief Define default CPU frequency, if this is not already defined. */
+#define F_CPU 2000000UL
+#endif
+
+#include <stdint.h>
+#include <stdbool.h>
+#include <stdlib.h>
+
+/*! \brief This macro will protect the following code from interrupts. */
+#define AVR_ENTER_CRITICAL_REGION( ) uint8_t volatile saved_sreg = SREG; \
+                                     cli();
+
+/*! \brief This macro must always be used in conjunction with AVR_ENTER_CRITICAL_REGION
+ *        so the interrupts are enabled again.
+ */
+#define AVR_LEAVE_CRITICAL_REGION( ) SREG = saved_sreg;
+
+#if defined( __ICCAVR__ )
+
+#include <inavr.h>
+#include <ioavr.h>
+#include <intrinsics.h>
+#include <pgmspace.h>
+
+#ifndef __HAS_ELPM__
+#define _MEMATTR  __flash
+#else /* __HAS_ELPM__ */
+#define _MEMATTR  __farflash
+#endif /* __HAS_ELPM__ */
+
+/*! \brief Perform a delay of \c us microseconds.
+ *
+ *  The macro F_CPU is supposed to be defined to a constant defining the CPU
+ *  clock frequency (in Hertz).
+ *
+ *  The maximal possible delay is 262.14 ms / F_CPU in MHz.
+ *
+ *  \note For the IAR compiler, currently F_CPU must be a
+ *        multiple of 1000000UL (1 MHz).
+ */
+#define delay_us( us )   ( __delay_cycles( ( F_CPU / 1000000UL ) * ( us ) ) )
+
+/*! \brief Preprocessor magic.
+ *
+ *  Some preprocessor magic to allow for a header file abstraction of
+ *  interrupt service routine declarations for the IAR compiler.  This
+ *  requires the use of the C99 _Pragma() directive (rather than the
+ *  old #pragma one that could not be used as a macro replacement), as
+ *  well as two different levels of preprocessor concetanations in
+ *  order to do both, assign the correct interrupt vector name, as well
+ *  as construct a unique function name for the ISR.
+ *
+ *  \note Do *NOT* try to reorder the macros below, as this will only
+ *        work in the given order.
+ */
+#define PRAGMA(x) _Pragma( #x )
+#define ISR(vec) PRAGMA( vector=vec ) __interrupt void handler_##vec(void)
+#define sei( ) (__enable_interrupt( ))
+#define cli( ) (__disable_interrupt( ))
+
+/*! \brief Define the no operation macro. */
+#define nop( ) (__no_operation())
+
+/*! \brief Define the watchdog reset macro. */
+#define watchdog_reset( ) (__watchdog_reset( ))
+
+
+#define INLINE PRAGMA( inline=forced ) static
+
+#define FLASH_DECLARE(x) _MEMATTR x
+#define FLASH_STRING(x) ((_MEMATTR const char *)(x))
+#define FLASH_STRING_T  char const _MEMATTR *
+#define FLASH_BYTE_ARRAY_T uint8_t const _MEMATTR *
+#define PGM_READ_BYTE(x) *(x)
+#define PGM_READ_WORD(x) *(x)
+
+#define SHORTENUM /**/
+
+#elif defined( __GNUC__ )
+
+#include <avr/io.h>
+#include <avr/interrupt.h>
+#include <avr/pgmspace.h>
+#include <util/delay.h>
+
+/*! \brief Define the delay_us macro for GCC. */
+#define delay_us( us )   (_delay_us( us ))
+
+#define INLINE static inline
+
+/*! \brief Define the no operation macro. */
+#define nop()   do { __asm__ __volatile__ ("nop"); } while (0)
+
+#define MAIN_TASK_PROLOGUE int
+
+
+#define MAIN_TASK_EPILOGUE() return -1;
+
+#define SHORTENUM __attribute__ ((packed))
+
+#else
+#error Compiler not supported.
+#endif
+
+#endif
+

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/usart_driver.c

@@ -0,0 +1,320 @@
+/* This file has been prepared for Doxygen automatic documentation generation.*/
+/*! \file *********************************************************************
+ *
+ * \brief
+ *      XMEGA USART driver source file.
+ *
+ *      This file contains the function implementations the XMEGA interrupt
+ *      and polled USART driver.
+ *
+ *      The driver is not intended for size and/or speed critical code, since
+ *      most functions are just a few lines of code, and the function call
+ *      overhead would decrease code performance. The driver is intended for
+ *      rapid prototyping and documentation purposes for getting started with
+ *      the XMEGA ADC module.
+ *
+ *      For size and/or speed critical code, it is recommended to copy the
+ *      function contents directly into your application instead of making
+ *      a function call.
+ *
+ *      Some functions use the following construct:
+ *          "some_register = ... | (some_parameter ? SOME_BIT_bm : 0) | ..."
+ *      Although the use of the ternary operator ( if ? then : else ) is discouraged,
+ *      in some occasions the operator makes it possible to write pretty clean and
+ *      neat code. In this driver, the construct is used to set or not set a
+ *      configuration bit based on a boolean input parameter, such as
+ *      the "some_parameter" in the example above.
+ *
+ * \par Application note:
+ *      AVR1307: Using the XMEGA USART
+ *
+ * \par Documentation
+ *      For comprehensive code documentation, supported compilers, compiler
+ *      settings and supported devices see readme.html
+ *
+ * \author
+ *      Atmel Corporation: http://www.atmel.com \n
+ *      Support email: avr@atmel.com
+ *
+ * $Revision: 1694 $
+ * $Date: 2008-07-29 14:21:58 +0200 (ti, 29 jul 2008) $  \n
+ *
+ * Copyright (c) 2008, Atmel Corporation All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ *
+ * 1. Redistributions of source code must retain the above copyright notice,
+ * this list of conditions and the following disclaimer.
+ *
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ * this list of conditions and the following disclaimer in the documentation
+ * and/or other materials provided with the distribution.
+ *
+ * 3. The name of ATMEL may not be used to endorse or promote products derived
+ * from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY ATMEL "AS IS" AND ANY EXPRESS OR IMPLIED
+ * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE EXPRESSLY AND
+ * SPECIFICALLY DISCLAIMED. IN NO EVENT SHALL ATMEL BE LIABLE FOR ANY DIRECT,
+ * INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ *****************************************************************************/
+#include "usart_driver.h"
+
+
+
+/*! \brief Initializes buffer and selects what USART module to use.
+ *
+ *  Initializes receive and transmit buffer and selects what USART module to use,
+ *  and stores the data register empty interrupt level.
+ *
+ *  \param usart_data           The USART_data_t struct instance.
+ *  \param usart                The USART module.
+ *  \param dreIntLevel          Data register empty interrupt level.
+ */
+void USART_InterruptDriver_Initialize(USART_data_t * usart_data,
+                                      USART_t * usart,
+                                      USART_DREINTLVL_t dreIntLevel)
+{
+	usart_data->usart = usart;
+	usart_data->dreIntLevel = dreIntLevel;
+
+	usart_data->buffer.RX_Tail = 0;
+	usart_data->buffer.RX_Head = 0;
+	usart_data->buffer.TX_Tail = 0;
+	usart_data->buffer.TX_Head = 0;
+}
+
+
+/*! \brief Set USART DRE interrupt level.
+ *
+ *  Set the interrupt level on Data Register interrupt.
+ *
+ *  \note Changing the DRE interrupt level in the interrupt driver while it is
+ *        running will not change the DRE interrupt level in the USART before the
+ *        DRE interrupt have been disabled and enabled again.
+ *
+ *  \param usart_data         The USART_data_t struct instance
+ *  \param dreIntLevel        Interrupt level of the DRE interrupt.
+ */
+void USART_InterruptDriver_DreInterruptLevel_Set(USART_data_t * usart_data,
+                                                 USART_DREINTLVL_t dreIntLevel)
+{
+	usart_data->dreIntLevel = dreIntLevel;
+}
+
+
+/*! \brief Test if there is data in the transmitter software buffer.
+ *
+ *  This function can be used to test if there is free space in the transmitter
+ *  software buffer.
+ *
+ *  \param usart_data The USART_data_t struct instance.
+ *
+ *  \retval true      There is data in the receive buffer.
+ *  \retval false     The receive buffer is empty.
+ */
+bool USART_TXBuffer_FreeSpace(USART_data_t * usart_data)
+{
+	/* Make copies to make sure that volatile access is specified. */
+	uint8_t tempHead = (usart_data->buffer.TX_Head + 1) & USART_TX_BUFFER_MASK;
+	uint8_t tempTail = usart_data->buffer.TX_Tail;
+
+	/* There are data left in the buffer unless Head and Tail are equal. */
+	return (tempHead != tempTail);
+}
+
+
+
+/*! \brief Put data (5-8 bit character).
+ *
+ *  Stores data byte in TX software buffer and enables DRE interrupt if there
+ *  is free space in the TX software buffer.
+ *
+ *  \param usart_data The USART_data_t struct instance.
+ *  \param data       The data to send.
+ */
+bool USART_TXBuffer_PutByte(USART_data_t * usart_data, uint8_t data)
+{
+	uint8_t tempCTRLA;
+	uint8_t tempTX_Head;
+	bool TXBuffer_FreeSpace;
+	USART_Buffer_t * TXbufPtr;
+
+	TXbufPtr = &usart_data->buffer;
+	TXBuffer_FreeSpace = USART_TXBuffer_FreeSpace(usart_data);
+
+
+	if(TXBuffer_FreeSpace)
+	{
+	  	tempTX_Head = TXbufPtr->TX_Head;
+	  	TXbufPtr->TX[tempTX_Head]= data;
+		/* Advance buffer head. */
+		TXbufPtr->TX_Head = (tempTX_Head + 1) & USART_TX_BUFFER_MASK;
+
+		/* Enable DRE interrupt. */
+		tempCTRLA = usart_data->usart->CTRLA;
+		tempCTRLA = (tempCTRLA & ~USART_DREINTLVL_gm) | usart_data->dreIntLevel;
+		usart_data->usart->CTRLA = tempCTRLA;
+	}
+	return TXBuffer_FreeSpace;
+}
+
+
+
+/*! \brief Test if there is data in the receive software buffer.
+ *
+ *  This function can be used to test if there is data in the receive software
+ *  buffer.
+ *
+ *  \param usart_data         The USART_data_t struct instance
+ *
+ *  \retval true      There is data in the receive buffer.
+ *  \retval false     The receive buffer is empty.
+ */
+bool USART_RXBufferData_Available(USART_data_t * usart_data)
+{
+	/* Make copies to make sure that volatile access is specified. */
+	uint8_t tempHead = usart_data->buffer.RX_Head;
+	uint8_t tempTail = usart_data->buffer.RX_Tail;
+
+	/* There are data left in the buffer unless Head and Tail are equal. */
+	return (tempHead != tempTail);
+}
+
+
+
+/*! \brief Get received data (5-8 bit character).
+ *
+ *  The function USART_RXBufferData_Available should be used before this
+ *  function is used to ensure that data is available.
+ *
+ *  Returns data from RX software buffer.
+ *
+ *  \param usart_data       The USART_data_t struct instance.
+ *
+ *  \return         Received data.
+ */
+uint8_t USART_RXBuffer_GetByte(USART_data_t * usart_data)
+{
+	USART_Buffer_t * bufPtr;
+	uint8_t ans;
+
+	bufPtr = &usart_data->buffer;
+	ans = (bufPtr->RX[bufPtr->RX_Tail]);
+
+	/* Advance buffer tail. */
+	bufPtr->RX_Tail = (bufPtr->RX_Tail + 1) & USART_RX_BUFFER_MASK;
+
+	return ans;
+}
+
+
+
+/*! \brief RX Complete Interrupt Service Routine.
+ *
+ *  RX Complete Interrupt Service Routine.
+ *  Stores received data in RX software buffer.
+ *
+ *  \param usart_data      The USART_data_t struct instance.
+ */
+bool USART_RXComplete(USART_data_t * usart_data)
+{
+	USART_Buffer_t * bufPtr;
+	bool ans;
+
+	bufPtr = &usart_data->buffer;
+	/* Advance buffer head. */
+	uint8_t tempRX_Head = (bufPtr->RX_Head + 1) & USART_RX_BUFFER_MASK;
+
+	/* Check for overflow. */
+	uint8_t tempRX_Tail = bufPtr->RX_Tail;
+	uint8_t data = usart_data->usart->DATA;
+
+	if (tempRX_Head == tempRX_Tail) {
+	  	ans = false;
+	}else{
+		ans = true;
+		usart_data->buffer.RX[usart_data->buffer.RX_Head] = data;
+		usart_data->buffer.RX_Head = tempRX_Head;
+	}
+	return ans;
+}
+
+
+
+/*! \brief Data Register Empty Interrupt Service Routine.
+ *
+ *  Data Register Empty Interrupt Service Routine.
+ *  Transmits one byte from TX software buffer. Disables DRE interrupt if buffer
+ *  is empty. Argument is pointer to USART (USART_data_t).
+ *
+ *  \param usart_data      The USART_data_t struct instance.
+ */
+void USART_DataRegEmpty(USART_data_t * usart_data)
+{
+	USART_Buffer_t * bufPtr;
+	bufPtr = &usart_data->buffer;
+
+	/* Check if all data is transmitted. */
+	uint8_t tempTX_Tail = usart_data->buffer.TX_Tail;
+	if (bufPtr->TX_Head == tempTX_Tail){
+	    /* Disable DRE interrupts. */
+		uint8_t tempCTRLA = usart_data->usart->CTRLA;
+		tempCTRLA = (tempCTRLA & ~USART_DREINTLVL_gm) | USART_DREINTLVL_OFF_gc;
+		usart_data->usart->CTRLA = tempCTRLA;
+
+	}else{
+		/* Start transmitting. */
+		uint8_t data = bufPtr->TX[usart_data->buffer.TX_Tail];
+		usart_data->usart->DATA = data;
+
+		/* Advance buffer tail. */
+		bufPtr->TX_Tail = (bufPtr->TX_Tail + 1) & USART_TX_BUFFER_MASK;
+	}
+}
+
+
+/*! \brief Put data (9 bit character).
+ *
+ *  Use the function USART_IsTXDataRegisterEmpty before using this function to
+ *  put 9 bit character to the TX register.
+ *
+ *  \param usart      The USART module.
+ *  \param data       The data to send.
+ */
+void USART_NineBits_PutChar(USART_t * usart, uint16_t data)
+{
+	if(data & 0x0100) {
+		usart->CTRLB |= USART_TXB8_bm;
+	}else {
+		usart->CTRLB &= ~USART_TXB8_bm;
+	}
+
+	usart->DATA = (data & 0x00FF);
+}
+
+
+/*! \brief Get received data (9 bit character).
+ *
+ *  This function reads out the received 9 bit character (uint16_t).
+ *  Use the function USART_IsRXComplete to check if anything is received.
+ *
+ *  \param usart      The USART module.
+ *
+ *  \retval           Received data.
+ */
+uint16_t USART_NineBits_GetChar(USART_t * usart)
+{
+	if(usart->CTRLB & USART_RXB8_bm) {
+		return(0x0100 | usart->DATA);
+	}else {
+		return(usart->DATA);
+	}
+}

OSU SARL/Control Board Firmware/Pick And Plate/Driver Board Revision 2.0/Firmware/usart_driver.h

@@ -0,0 +1,306 @@
+/* This file has been prepared for Doxygen automatic documentation generation.*/
+/*! \file *********************************************************************
+ *
+ * \brief  XMEGA USART driver header file.
+ *
+ *      This file contains the function prototypes and enumerator definitions
+ *      for various configuration parameters for the XMEGA USART driver.
+ *
+ *      The driver is not intended for size and/or speed critical code, since
+ *      most functions are just a few lines of code, and the function call
+ *      overhead would decrease code performance. The driver is intended for
+ *      rapid prototyping and documentation purposes for getting started with
+ *      the XMEGA ADC module.
+ *
+ *      For size and/or speed critical code, it is recommended to copy the
+ *      function contents directly into your application instead of making
+ *      a function call.
+ *
+ * \par Application note:
+ *      AVR1307: Using the XMEGA USART
+ *
+ * \par Documentation
+ *      For comprehensive code documentation, supported compilers, compiler
+ *      settings and supported devices see readme.html
+ *
+ * \author
+ *      Atmel Corporation: http://www.atmel.com \n
+ *      Support email: avr@atmel.com
+ *
+ * $Revision: 1694 $
+ * $Date: 2008-07-29 14:21:58 +0200 (ti, 29 jul 2008) $  \n
+ *
+ * Copyright (c) 2008, Atmel Corporation All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ *
+ * 1. Redistributions of source code must retain the above copyright notice,
+ * this list of conditions and the following disclaimer.
+ *
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ * this list of conditions and the following disclaimer in the documentation
+ * and/or other materials provided with the distribution.
+ *
+ * 3. The name of ATMEL may not be used to endorse or promote products derived
+ * from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY ATMEL "AS IS" AND ANY EXPRESS OR IMPLIED
+ * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE EXPRESSLY AND
+ * SPECIFICALLY DISCLAIMED. IN NO EVENT SHALL ATMEL BE LIABLE FOR ANY DIRECT,
+ * INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ *****************************************************************************/
+#ifndef USART_DRIVER_H
+#define USART_DRIVER_H
+
+#include "avr_compiler.h"
+
+/* USART buffer defines. */
+
+/* \brief  Receive buffer size: 2,4,8,16,32,64,128 or 256 bytes. */
+#define USART_RX_BUFFER_SIZE 4
+/* \brief Transmit buffer size: 2,4,8,16,32,64,128 or 256 bytes */
+#define USART_TX_BUFFER_SIZE 4
+/* \brief Receive buffer mask. */
+#define USART_RX_BUFFER_MASK ( USART_RX_BUFFER_SIZE - 1 )
+/* \brief Transmit buffer mask. */
+#define USART_TX_BUFFER_MASK ( USART_TX_BUFFER_SIZE - 1 )
+
+
+#if ( USART_RX_BUFFER_SIZE & USART_RX_BUFFER_MASK )
+#error RX buffer size is not a power of 2
+#endif
+#if ( USART_TX_BUFFER_SIZE & USART_TX_BUFFER_MASK )
+#error TX buffer size is not a power of 2
+#endif
+
+
+/* \brief USART transmit and receive ring buffer. */
+typedef struct USART_Buffer
+{
+	/* \brief Receive buffer. */
+	volatile uint8_t RX[USART_RX_BUFFER_SIZE];
+	/* \brief Transmit buffer. */
+	volatile uint8_t TX[USART_TX_BUFFER_SIZE];
+	/* \brief Receive buffer head. */
+	volatile uint8_t RX_Head;
+	/* \brief Receive buffer tail. */
+	volatile uint8_t RX_Tail;
+	/* \brief Transmit buffer head. */
+	volatile uint8_t TX_Head;
+	/* \brief Transmit buffer tail. */
+	volatile uint8_t TX_Tail;
+} USART_Buffer_t;
+
+
+/*! \brief Struct used when interrupt driven driver is used.
+*
+*  Struct containing pointer to a usart, a buffer and a location to store Data
+*  register interrupt level temporary.
+*/
+typedef struct Usart_and_buffer
+{
+	/* \brief Pointer to USART module to use. */
+	USART_t * usart;
+	/* \brief Data register empty interrupt level. */
+	USART_DREINTLVL_t dreIntLevel;
+	/* \brief Data buffer. */
+	USART_Buffer_t buffer;
+} USART_data_t;
+
+
+/* Macros. */
+
+/*! \brief Macro that sets the USART frame format.
+ *
+ *  Sets the frame format, Frame Size, parity mode and number of stop bits.
+ *
+ *  \param _usart        Pointer to the USART module
+ *  \param _charSize     The character size. Use USART_CHSIZE_t type.
+ *  \param _parityMode   The parity Mode. Use USART_PMODE_t type.
+ *  \param _twoStopBits  Enable two stop bit mode. Use bool type.
+ */
+#define USART_Format_Set(_usart, _charSize, _parityMode, _twoStopBits)         \
+	(_usart)->CTRLC = (uint8_t) _charSize | _parityMode |                      \
+	                  (_twoStopBits ? USART_SBMODE_bm : 0)
+
+
+/*! \brief Set USART baud rate.
+ *
+ *  Sets the USART's baud rate register.
+ *
+ *  UBRR_Value   : Value written to UBRR
+ *  ScaleFactor  : Time Base Generator Scale Factor
+ *
+ *  Equation for calculation of BSEL value in asynchronous normal speed mode:
+ *  	If ScaleFactor >= 0
+ *  		BSEL = ((I/O clock frequency)/(2^(ScaleFactor)*16*Baudrate))-1
+ *  	If ScaleFactor < 0
+ *  		BSEL = (1/(2^(ScaleFactor)*16))*(((I/O clock frequency)/Baudrate)-1)
+ *
+ *	\note See XMEGA manual for equations for calculation of BSEL value in other
+ *        modes.
+ *
+ *  \param _usart          Pointer to the USART module.
+ *  \param _bselValue      Value to write to BSEL part of Baud control register.
+ *                         Use uint16_t type.
+ *  \param _bScaleFactor   USART baud rate scale factor.
+ *                         Use uint8_t type
+ */
+#define USART_Baudrate_Set(_usart, _bselValue, _bScaleFactor)                  \
+	(_usart)->BAUDCTRLA =(uint8_t)_bselValue;                                           \
+	(_usart)->BAUDCTRLB =(_bScaleFactor << USART_BSCALE0_bp)|(_bselValue >> 8)
+
+
+/*! \brief Enable USART receiver.
+ *
+ *  \param _usart    Pointer to the USART module
+ */
+#define USART_Rx_Enable(_usart) ((_usart)->CTRLB |= USART_RXEN_bm)
+
+
+/*! \brief Disable USART receiver.
+ *
+ *  \param _usart Pointer to the USART module.
+ */
+#define USART_Rx_Disable(_usart) ((_usart)->CTRLB &= ~USART_RXEN_bm)
+
+
+/*! \brief Enable USART transmitter.
+ *
+ *  \param _usart Pointer to the USART module.
+ */
+#define USART_Tx_Enable(_usart)	((_usart)->CTRLB |= USART_TXEN_bm)
+
+
+/*! \brief Disable USART transmitter.
+ *
+ *  \param _usart Pointer to the USART module.
+ */
+#define USART_Tx_Disable(_usart) ((_usart)->CTRLB &= ~USART_TXEN_bm)
+
+
+/*! \brief Set USART RXD interrupt level.
+ *
+ *  Sets the interrupt level on RX Complete interrupt.
+ *
+ *  \param _usart        Pointer to the USART module.
+ *  \param _rxdIntLevel  Interrupt level of the RXD interrupt.
+ *                       Use USART_RXCINTLVL_t type.
+ */
+#define USART_RxdInterruptLevel_Set(_usart, _rxdIntLevel)                      \
+	((_usart)->CTRLA = ((_usart)->CTRLA & ~USART_RXCINTLVL_gm) | _rxdIntLevel)
+
+
+/*! \brief Set USART TXD interrupt level.
+ *
+ *  Sets the interrupt level on TX Complete interrupt.
+ *
+ *  \param _usart        Pointer to the USART module.
+ *  \param _txdIntLevel  Interrupt level of the TXD interrupt.
+ *                       Use USART_TXCINTLVL_t type.
+ */
+#define USART_TxdInterruptLevel_Set(_usart, _txdIntLevel)                      \
+	(_usart)->CTRLA = ((_usart)->CTRLA & ~USART_TXCINTLVL_gm) | _txdIntLevel
+
+
+
+/*! \brief Set USART DRE interrupt level.
+ *
+ *  Sets the interrupt level on Data Register interrupt.
+ *
+ *  \param _usart        Pointer to the USART module.
+ *  \param _dreIntLevel  Interrupt level of the DRE interrupt.
+ *                       Use USART_DREINTLVL_t type.
+ */
+#define USART_DreInterruptLevel_Set(_usart, _dreIntLevel)                      \
+	(_usart)->CTRLA = ((_usart)->CTRLA & ~USART_DREINTLVL_gm) | _dreIntLevel
+
+
+/*! \brief Set the mode the USART run in.
+ *
+ * Set the mode the USART run in. The default mode is asynchronous mode.
+ *
+ *  \param  _usart       Pointer to the USART module register section.
+ *  \param  _usartMode   Selects the USART mode. Use  USART_CMODE_t type.
+ *
+ *  USART modes:
+ *  - 0x0        : Asynchronous mode.
+ *  - 0x1        : Synchronous mode.
+ *  - 0x2        : IrDA mode.
+ *  - 0x3        : Master SPI mode.
+ */
+#define USART_SetMode(_usart, _usartMode)                                      \
+	((_usart)->CTRLC = ((_usart)->CTRLC & (~USART_CMODE_gm)) | _usartMode)
+
+
+
+/*! \brief Check if data register empty flag is set.
+ *
+ *  \param _usart      The USART module.
+ */
+#define USART_IsTXDataRegisterEmpty(_usart) (((_usart)->STATUS & USART_DREIF_bm) != 0)
+
+
+
+/*! \brief Put data (5-8 bit character).
+ *
+ *  Use the macro USART_IsTXDataRegisterEmpty before using this function to
+ *  put data to the TX register.
+ *
+ *  \param _usart      The USART module.
+ *  \param _data       The data to send.
+ */
+#define USART_PutChar(_usart, _data) ((_usart)->DATA = _data)
+
+
+
+/*! \brief Checks if the RX complete interrupt flag is set.
+ *
+ *   Checks if the RX complete interrupt flag is set.
+ *
+ *  \param _usart     The USART module.
+ */
+#define USART_IsRXComplete(_usart) (((_usart)->STATUS & USART_RXCIF_bm) != 0)
+
+
+
+
+/*! \brief Get received data (5-8 bit character).
+ *
+ *  This macro reads out the RX register.
+ *  Use the macro USART_RX_Complete to check if anything is received.
+ *
+ *  \param _usart     The USART module.
+ *
+ *  \retval           Received data.
+ */
+#define USART_GetChar(_usart)  ((_usart)->DATA)
+
+
+/* Functions for interrupt driven driver. */
+void USART_InterruptDriver_Initialize(USART_data_t * usart_data,
+                                      USART_t * usart,
+                                      USART_DREINTLVL_t dreIntLevel );
+
+void USART_InterruptDriver_DreInterruptLevel_Set(USART_data_t * usart_data,
+                                                 USART_DREINTLVL_t dreIntLevel);
+
+bool USART_TXBuffer_FreeSpace(USART_data_t * usart_data);
+bool USART_TXBuffer_PutByte(USART_data_t * usart_data, uint8_t data);
+bool USART_RXBufferData_Available(USART_data_t * usart_data);
+uint8_t USART_RXBuffer_GetByte(USART_data_t * usart_data);
+bool USART_RXComplete(USART_data_t * usart_data);
+void USART_DataRegEmpty(USART_data_t * usart_data);
+
+/* Functions for polled driver. */
+void USART_NineBits_PutChar(USART_t * usart, uint16_t data);
+uint16_t USART_NineBits_GetChar(USART_t * usart);
+
+#endif

OSU SARL/Control Board Firmware/Science Rocker Plate/README.txt

@@ -0,0 +1 @@
+This was super simple. The speed control on a scientific rocker failed, so I build a replacement using an attiny, mosftet, and pot. 

OSU SARL/Control Board Firmware/Science Rocker Plate/RockerCode.ino

@@ -0,0 +1,15 @@
+
+int mot = 0;
+int pot = A1;
+
+
+void setup() {                
+  pinMode(mot, OUTPUT);  
+  pinMode(pot, INPUT);  
+}
+
+
+void loop() {
+  analogWrite(mot, analogRead(pot)/4);
+}
+

OSU SARL/Desktop Applications/EmbryoPickAndPlace/EmbryoPickAndPlace.pro

@@ -0,0 +1,51 @@
+#-------------------------------------------------
+#
+# Project created by QtCreator 2014-07-13T15:53:01
+#
+#-------------------------------------------------
+
+QT       += core gui
+
+greaterThan(QT_MAJOR_VERSION, 4): QT += widgets
+
+TARGET = EmbryoPickAndPlace
+TEMPLATE = app
+
+
+SOURCES += main.cpp\
+        mainwindow.cpp \
+    driverboardserial.cpp \
+    embryoprocesser.cpp
+
+HEADERS  += mainwindow.h \
+    driverboardserial.h \
+    embryoprocesser.h
+
+FORMS    += mainwindow.ui
+
+DEPENDPATH += . qextserial
+
+INCLUDEPATH += /usr/include/opencv \
+               . qextserial
+
+include(qextserialport-1.2rc/src/qextserialport.pri)
+
+LIBS += -L/usr/lib \
+        -lopencv_calib3d \
+        -lopencv_contrib \
+        -lopencv_core \
+        -lopencv_features2d \
+        -lopencv_flann \
+        -lopencv_gpu \
+        -lopencv_highgui \
+        -lopencv_imgproc \
+        -lopencv_legacy \
+        -lopencv_ml \
+        -lopencv_objdetect \
+        -lopencv_ocl \
+        -lopencv_photo \
+        -lopencv_stitching \
+        -lopencv_superres \
+        -lopencv_ts \
+        -lopencv_video \
+        -lopencv_videostab

OSU SARL/Desktop Applications/EmbryoPickAndPlace/EmbryoPickAndPlace.pro.user

@@ -0,0 +1,260 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE QtCreatorProject>
+<!-- Written by QtCreator 3.0.1, 2014-08-20T17:29:55. -->
+<qtcreator>
+ <data>
+  <variable>ProjectExplorer.Project.ActiveTarget</variable>
+  <value type="int">0</value>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.EditorSettings</variable>
+  <valuemap type="QVariantMap">
+   <value type="bool" key="EditorConfiguration.AutoIndent">true</value>
+   <value type="bool" key="EditorConfiguration.AutoSpacesForTabs">false</value>
+   <value type="bool" key="EditorConfiguration.CamelCaseNavigation">true</value>
+   <valuemap type="QVariantMap" key="EditorConfiguration.CodeStyle.0">
+    <value type="QString" key="language">Cpp</value>
+    <valuemap type="QVariantMap" key="value">
+     <value type="QByteArray" key="CurrentPreferences">CppGlobal</value>
+    </valuemap>
+   </valuemap>
+   <valuemap type="QVariantMap" key="EditorConfiguration.CodeStyle.1">
+    <value type="QString" key="language">QmlJS</value>
+    <valuemap type="QVariantMap" key="value">
+     <value type="QByteArray" key="CurrentPreferences">QmlJSGlobal</value>
+    </valuemap>
+   </valuemap>
+   <value type="int" key="EditorConfiguration.CodeStyle.Count">2</value>
+   <value type="QByteArray" key="EditorConfiguration.Codec">UTF-8</value>
+   <value type="bool" key="EditorConfiguration.ConstrainTooltips">false</value>
+   <value type="int" key="EditorConfiguration.IndentSize">4</value>
+   <value type="bool" key="EditorConfiguration.KeyboardTooltips">false</value>
+   <value type="bool" key="EditorConfiguration.MouseNavigation">true</value>
+   <value type="int" key="EditorConfiguration.PaddingMode">1</value>
+   <value type="bool" key="EditorConfiguration.ScrollWheelZooming">true</value>
+   <value type="int" key="EditorConfiguration.SmartBackspaceBehavior">0</value>
+   <value type="bool" key="EditorConfiguration.SpacesForTabs">true</value>
+   <value type="int" key="EditorConfiguration.TabKeyBehavior">0</value>
+   <value type="int" key="EditorConfiguration.TabSize">8</value>
+   <value type="bool" key="EditorConfiguration.UseGlobal">true</value>
+   <value type="int" key="EditorConfiguration.Utf8BomBehavior">1</value>
+   <value type="bool" key="EditorConfiguration.addFinalNewLine">true</value>
+   <value type="bool" key="EditorConfiguration.cleanIndentation">true</value>
+   <value type="bool" key="EditorConfiguration.cleanWhitespace">true</value>
+   <value type="bool" key="EditorConfiguration.inEntireDocument">false</value>
+  </valuemap>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.PluginSettings</variable>
+  <valuemap type="QVariantMap"/>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.Target.0</variable>
+  <valuemap type="QVariantMap">
+   <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Desktop</value>
+   <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName">Desktop</value>
+   <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">{f05fbec3-c767-41ed-9041-8adb0cbced2f}</value>
+   <value type="int" key="ProjectExplorer.Target.ActiveBuildConfiguration">0</value>
+   <value type="int" key="ProjectExplorer.Target.ActiveDeployConfiguration">0</value>
+   <value type="int" key="ProjectExplorer.Target.ActiveRunConfiguration">0</value>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.BuildConfiguration.0">
+    <value type="QString" key="ProjectExplorer.BuildConfiguration.BuildDirectory">/mnt/500GBINT/Google Drive/_Work Related/SARL ECE/QT_Applications/EmbryoPickAndPlace/build-EmbryoPickAndPlace-Desktop-Debug</value>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.0">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">qmake</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">QtProjectManager.QMakeBuildStep</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibrary">false</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibraryAuto">true</value>
+      <value type="QString" key="QtProjectManager.QMakeBuildStep.QMakeArguments"></value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.QMakeForced">false</value>
+     </valuemap>
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.1">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">false</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments"></value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">2</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Build</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Build</value>
+    </valuemap>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.1">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">true</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments">clean</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">1</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Clean</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Clean</value>
+    </valuemap>
+    <value type="int" key="ProjectExplorer.BuildConfiguration.BuildStepListCount">2</value>
+    <value type="bool" key="ProjectExplorer.BuildConfiguration.ClearSystemEnvironment">false</value>
+    <valuelist type="QVariantList" key="ProjectExplorer.BuildConfiguration.UserEnvironmentChanges"/>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Debug</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.Qt4BuildConfiguration</value>
+    <value type="int" key="Qt4ProjectManager.Qt4BuildConfiguration.BuildConfiguration">2</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4BuildConfiguration.UseShadowBuild">true</value>
+   </valuemap>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.BuildConfiguration.1">
+    <value type="QString" key="ProjectExplorer.BuildConfiguration.BuildDirectory">/mnt/500GBINT/Google Drive/_Work Related/SARL ECE/QT_Applications/EmbryoPickAndPlace/build-EmbryoPickAndPlace-Desktop-Release</value>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.0">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">qmake</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">QtProjectManager.QMakeBuildStep</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibrary">false</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibraryAuto">true</value>
+      <value type="QString" key="QtProjectManager.QMakeBuildStep.QMakeArguments"></value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.QMakeForced">false</value>
+     </valuemap>
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.1">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">false</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments"></value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">2</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Build</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Build</value>
+    </valuemap>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.1">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">true</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments">clean</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">1</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Clean</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Clean</value>
+    </valuemap>
+    <value type="int" key="ProjectExplorer.BuildConfiguration.BuildStepListCount">2</value>
+    <value type="bool" key="ProjectExplorer.BuildConfiguration.ClearSystemEnvironment">false</value>
+    <valuelist type="QVariantList" key="ProjectExplorer.BuildConfiguration.UserEnvironmentChanges"/>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Release</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.Qt4BuildConfiguration</value>
+    <value type="int" key="Qt4ProjectManager.Qt4BuildConfiguration.BuildConfiguration">0</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4BuildConfiguration.UseShadowBuild">true</value>
+   </valuemap>
+   <value type="int" key="ProjectExplorer.Target.BuildConfigurationCount">2</value>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.DeployConfiguration.0">
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.0">
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">0</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Deploy</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Deploy</value>
+    </valuemap>
+    <value type="int" key="ProjectExplorer.BuildConfiguration.BuildStepListCount">1</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Deploy locally</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.DefaultDeployConfiguration</value>
+   </valuemap>
+   <value type="int" key="ProjectExplorer.Target.DeployConfigurationCount">1</value>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.PluginSettings"/>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.RunConfiguration.0">
+    <valuelist type="QVariantList" key="Analyzer.Valgrind.AddedSuppressionFiles"/>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.CollectBusEvents">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.CollectSystime">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableBranchSim">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableCacheSim">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableEventToolTips">true</value>
+    <value type="double" key="Analyzer.Valgrind.Callgrind.MinimumCostRatio">0.01</value>
+    <value type="double" key="Analyzer.Valgrind.Callgrind.VisualisationMinimumCostRatio">10</value>
+    <value type="bool" key="Analyzer.Valgrind.FilterExternalIssues">true</value>
+    <value type="int" key="Analyzer.Valgrind.LeakCheckOnFinish">1</value>
+    <value type="int" key="Analyzer.Valgrind.NumCallers">25</value>
+    <valuelist type="QVariantList" key="Analyzer.Valgrind.RemovedSuppressionFiles"/>
+    <value type="int" key="Analyzer.Valgrind.SelfModifyingCodeDetection">1</value>
+    <value type="bool" key="Analyzer.Valgrind.Settings.UseGlobalSettings">true</value>
+    <value type="bool" key="Analyzer.Valgrind.ShowReachable">false</value>
+    <value type="bool" key="Analyzer.Valgrind.TrackOrigins">true</value>
+    <value type="QString" key="Analyzer.Valgrind.ValgrindExecutable">valgrind</value>
+    <valuelist type="QVariantList" key="Analyzer.Valgrind.VisibleErrorKinds">
+     <value type="int">0</value>
+     <value type="int">1</value>
+     <value type="int">2</value>
+     <value type="int">3</value>
+     <value type="int">4</value>
+     <value type="int">5</value>
+     <value type="int">6</value>
+     <value type="int">7</value>
+     <value type="int">8</value>
+     <value type="int">9</value>
+     <value type="int">10</value>
+     <value type="int">11</value>
+     <value type="int">12</value>
+     <value type="int">13</value>
+     <value type="int">14</value>
+    </valuelist>
+    <value type="int" key="PE.EnvironmentAspect.Base">2</value>
+    <valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">EmbryoPickAndPlace</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.Qt4RunConfiguration:/mnt/500GBINT/Google Drive/_Work Related/SARL ECE/QT_Applications/EmbryoPickAndPlace/EmbryoPickAndPlace/EmbryoPickAndPlace.pro</value>
+    <value type="QString" key="Qt4ProjectManager.Qt4RunConfiguration.CommandLineArguments"></value>
+    <value type="QString" key="Qt4ProjectManager.Qt4RunConfiguration.ProFile">EmbryoPickAndPlace.pro</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4RunConfiguration.UseDyldImageSuffix">false</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4RunConfiguration.UseTerminal">false</value>
+    <value type="QString" key="Qt4ProjectManager.Qt4RunConfiguration.UserWorkingDirectory"></value>
+    <value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
+    <value type="bool" key="RunConfiguration.UseCppDebugger">true</value>
+    <value type="bool" key="RunConfiguration.UseCppDebuggerAuto">false</value>
+    <value type="bool" key="RunConfiguration.UseMultiProcess">false</value>
+    <value type="bool" key="RunConfiguration.UseQmlDebugger">false</value>
+    <value type="bool" key="RunConfiguration.UseQmlDebuggerAuto">true</value>
+   </valuemap>
+   <value type="int" key="ProjectExplorer.Target.RunConfigurationCount">1</value>
+  </valuemap>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.TargetCount</variable>
+  <value type="int">1</value>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.Updater.EnvironmentId</variable>
+  <value type="QByteArray">{6b79483e-0c1b-4ded-b774-5ac48e9bb025}</value>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.Updater.FileVersion</variable>
+  <value type="int">15</value>
+ </data>
+</qtcreator>

OSU SARL/Desktop Applications/EmbryoPickAndPlace/EmbryoPickAndPlace.pro.user.6b9d48b

@@ -0,0 +1,260 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE QtCreatorProject>
+<!-- Written by QtCreator 3.0.1, 2014-07-17T07:04:31. -->
+<qtcreator>
+ <data>
+  <variable>ProjectExplorer.Project.ActiveTarget</variable>
+  <value type="int">0</value>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.EditorSettings</variable>
+  <valuemap type="QVariantMap">
+   <value type="bool" key="EditorConfiguration.AutoIndent">true</value>
+   <value type="bool" key="EditorConfiguration.AutoSpacesForTabs">false</value>
+   <value type="bool" key="EditorConfiguration.CamelCaseNavigation">true</value>
+   <valuemap type="QVariantMap" key="EditorConfiguration.CodeStyle.0">
+    <value type="QString" key="language">Cpp</value>
+    <valuemap type="QVariantMap" key="value">
+     <value type="QByteArray" key="CurrentPreferences">CppGlobal</value>
+    </valuemap>
+   </valuemap>
+   <valuemap type="QVariantMap" key="EditorConfiguration.CodeStyle.1">
+    <value type="QString" key="language">QmlJS</value>
+    <valuemap type="QVariantMap" key="value">
+     <value type="QByteArray" key="CurrentPreferences">QmlJSGlobal</value>
+    </valuemap>
+   </valuemap>
+   <value type="int" key="EditorConfiguration.CodeStyle.Count">2</value>
+   <value type="QByteArray" key="EditorConfiguration.Codec">UTF-8</value>
+   <value type="bool" key="EditorConfiguration.ConstrainTooltips">false</value>
+   <value type="int" key="EditorConfiguration.IndentSize">4</value>
+   <value type="bool" key="EditorConfiguration.KeyboardTooltips">false</value>
+   <value type="bool" key="EditorConfiguration.MouseNavigation">true</value>
+   <value type="int" key="EditorConfiguration.PaddingMode">1</value>
+   <value type="bool" key="EditorConfiguration.ScrollWheelZooming">true</value>
+   <value type="int" key="EditorConfiguration.SmartBackspaceBehavior">0</value>
+   <value type="bool" key="EditorConfiguration.SpacesForTabs">true</value>
+   <value type="int" key="EditorConfiguration.TabKeyBehavior">0</value>
+   <value type="int" key="EditorConfiguration.TabSize">8</value>
+   <value type="bool" key="EditorConfiguration.UseGlobal">true</value>
+   <value type="int" key="EditorConfiguration.Utf8BomBehavior">1</value>
+   <value type="bool" key="EditorConfiguration.addFinalNewLine">true</value>
+   <value type="bool" key="EditorConfiguration.cleanIndentation">true</value>
+   <value type="bool" key="EditorConfiguration.cleanWhitespace">true</value>
+   <value type="bool" key="EditorConfiguration.inEntireDocument">false</value>
+  </valuemap>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.PluginSettings</variable>
+  <valuemap type="QVariantMap"/>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.Target.0</variable>
+  <valuemap type="QVariantMap">
+   <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Desktop</value>
+   <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName">Desktop</value>
+   <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">{34c7962e-5b64-4773-a6ac-450bdc8d8255}</value>
+   <value type="int" key="ProjectExplorer.Target.ActiveBuildConfiguration">0</value>
+   <value type="int" key="ProjectExplorer.Target.ActiveDeployConfiguration">0</value>
+   <value type="int" key="ProjectExplorer.Target.ActiveRunConfiguration">0</value>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.BuildConfiguration.0">
+    <value type="QString" key="ProjectExplorer.BuildConfiguration.BuildDirectory">/home/corwin/Google Drive/_Work Related/SARL ECE/QT_Applications/EmbryoPickAndPlace/build-EmbryoPickAndPlace-Desktop-Debug</value>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.0">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">qmake</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">QtProjectManager.QMakeBuildStep</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibrary">false</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibraryAuto">true</value>
+      <value type="QString" key="QtProjectManager.QMakeBuildStep.QMakeArguments"></value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.QMakeForced">false</value>
+     </valuemap>
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.1">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">false</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments"></value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">2</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Build</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Build</value>
+    </valuemap>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.1">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">true</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments">clean</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">1</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Clean</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Clean</value>
+    </valuemap>
+    <value type="int" key="ProjectExplorer.BuildConfiguration.BuildStepListCount">2</value>
+    <value type="bool" key="ProjectExplorer.BuildConfiguration.ClearSystemEnvironment">false</value>
+    <valuelist type="QVariantList" key="ProjectExplorer.BuildConfiguration.UserEnvironmentChanges"/>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Debug</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.Qt4BuildConfiguration</value>
+    <value type="int" key="Qt4ProjectManager.Qt4BuildConfiguration.BuildConfiguration">2</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4BuildConfiguration.UseShadowBuild">true</value>
+   </valuemap>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.BuildConfiguration.1">
+    <value type="QString" key="ProjectExplorer.BuildConfiguration.BuildDirectory">/home/corwin/Google Drive/_Work Related/SARL ECE/QT_Applications/EmbryoPickAndPlace/build-EmbryoPickAndPlace-Desktop-Release</value>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.0">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">qmake</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">QtProjectManager.QMakeBuildStep</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibrary">false</value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.LinkQmlDebuggingLibraryAuto">true</value>
+      <value type="QString" key="QtProjectManager.QMakeBuildStep.QMakeArguments"></value>
+      <value type="bool" key="QtProjectManager.QMakeBuildStep.QMakeForced">false</value>
+     </valuemap>
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.1">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">false</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments"></value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">2</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Build</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Build</value>
+    </valuemap>
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.1">
+     <valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
+      <value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+      <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.MakeStep</value>
+      <valuelist type="QVariantList" key="Qt4ProjectManager.MakeStep.AutomaticallyAddedMakeArguments">
+       <value type="QString">-w</value>
+       <value type="QString">-r</value>
+      </valuelist>
+      <value type="bool" key="Qt4ProjectManager.MakeStep.Clean">true</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeArguments">clean</value>
+      <value type="QString" key="Qt4ProjectManager.MakeStep.MakeCommand"></value>
+     </valuemap>
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">1</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Clean</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Clean</value>
+    </valuemap>
+    <value type="int" key="ProjectExplorer.BuildConfiguration.BuildStepListCount">2</value>
+    <value type="bool" key="ProjectExplorer.BuildConfiguration.ClearSystemEnvironment">false</value>
+    <valuelist type="QVariantList" key="ProjectExplorer.BuildConfiguration.UserEnvironmentChanges"/>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Release</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.Qt4BuildConfiguration</value>
+    <value type="int" key="Qt4ProjectManager.Qt4BuildConfiguration.BuildConfiguration">0</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4BuildConfiguration.UseShadowBuild">true</value>
+   </valuemap>
+   <value type="int" key="ProjectExplorer.Target.BuildConfigurationCount">2</value>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.DeployConfiguration.0">
+    <valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.0">
+     <value type="int" key="ProjectExplorer.BuildStepList.StepsCount">0</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Deploy</value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+     <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.BuildSteps.Deploy</value>
+    </valuemap>
+    <value type="int" key="ProjectExplorer.BuildConfiguration.BuildStepListCount">1</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Deploy locally</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">ProjectExplorer.DefaultDeployConfiguration</value>
+   </valuemap>
+   <value type="int" key="ProjectExplorer.Target.DeployConfigurationCount">1</value>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.PluginSettings"/>
+   <valuemap type="QVariantMap" key="ProjectExplorer.Target.RunConfiguration.0">
+    <valuelist type="QVariantList" key="Analyzer.Valgrind.AddedSuppressionFiles"/>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.CollectBusEvents">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.CollectSystime">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableBranchSim">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableCacheSim">false</value>
+    <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableEventToolTips">true</value>
+    <value type="double" key="Analyzer.Valgrind.Callgrind.MinimumCostRatio">0.01</value>
+    <value type="double" key="Analyzer.Valgrind.Callgrind.VisualisationMinimumCostRatio">10</value>
+    <value type="bool" key="Analyzer.Valgrind.FilterExternalIssues">true</value>
+    <value type="int" key="Analyzer.Valgrind.LeakCheckOnFinish">1</value>
+    <value type="int" key="Analyzer.Valgrind.NumCallers">25</value>
+    <valuelist type="QVariantList" key="Analyzer.Valgrind.RemovedSuppressionFiles"/>
+    <value type="int" key="Analyzer.Valgrind.SelfModifyingCodeDetection">1</value>
+    <value type="bool" key="Analyzer.Valgrind.Settings.UseGlobalSettings">true</value>
+    <value type="bool" key="Analyzer.Valgrind.ShowReachable">false</value>
+    <value type="bool" key="Analyzer.Valgrind.TrackOrigins">true</value>
+    <value type="QString" key="Analyzer.Valgrind.ValgrindExecutable">valgrind</value>
+    <valuelist type="QVariantList" key="Analyzer.Valgrind.VisibleErrorKinds">
+     <value type="int">0</value>
+     <value type="int">1</value>
+     <value type="int">2</value>
+     <value type="int">3</value>
+     <value type="int">4</value>
+     <value type="int">5</value>
+     <value type="int">6</value>
+     <value type="int">7</value>
+     <value type="int">8</value>
+     <value type="int">9</value>
+     <value type="int">10</value>
+     <value type="int">11</value>
+     <value type="int">12</value>
+     <value type="int">13</value>
+     <value type="int">14</value>
+    </valuelist>
+    <value type="int" key="PE.EnvironmentAspect.Base">2</value>
+    <valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">EmbryoPickAndPlace</value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
+    <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">Qt4ProjectManager.Qt4RunConfiguration:/home/corwin/Google Drive/_Work Related/SARL ECE/QT_Applications/EmbryoPickAndPlace/EmbryoPickAndPlace/EmbryoPickAndPlace.pro</value>
+    <value type="QString" key="Qt4ProjectManager.Qt4RunConfiguration.CommandLineArguments"></value>
+    <value type="QString" key="Qt4ProjectManager.Qt4RunConfiguration.ProFile">EmbryoPickAndPlace.pro</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4RunConfiguration.UseDyldImageSuffix">false</value>
+    <value type="bool" key="Qt4ProjectManager.Qt4RunConfiguration.UseTerminal">false</value>
+    <value type="QString" key="Qt4ProjectManager.Qt4RunConfiguration.UserWorkingDirectory"></value>
+    <value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
+    <value type="bool" key="RunConfiguration.UseCppDebugger">true</value>
+    <value type="bool" key="RunConfiguration.UseCppDebuggerAuto">false</value>
+    <value type="bool" key="RunConfiguration.UseMultiProcess">false</value>
+    <value type="bool" key="RunConfiguration.UseQmlDebugger">false</value>
+    <value type="bool" key="RunConfiguration.UseQmlDebuggerAuto">true</value>
+   </valuemap>
+   <value type="int" key="ProjectExplorer.Target.RunConfigurationCount">1</value>
+  </valuemap>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.TargetCount</variable>
+  <value type="int">1</value>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.Updater.EnvironmentId</variable>
+  <value type="QByteArray">{6b9d48b6-f37b-4df1-987a-f0f07b126f91}</value>
+ </data>
+ <data>
+  <variable>ProjectExplorer.Project.Updater.FileVersion</variable>
+  <value type="int">15</value>
+ </data>
+</qtcreator>

OSU SARL/Desktop Applications/EmbryoPickAndPlace/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/driverboardserial.cpp

@@ -0,0 +1,5 @@
+#include "driverboardserial.h"
+
+DriverBoardSerial::DriverBoardSerial()
+{
+}

OSU SARL/Desktop Applications/EmbryoPickAndPlace/driverboardserial.h

@@ -0,0 +1,21 @@
+#ifndef DRIVERBOARDSERIAL_H
+#define DRIVERBOARDSERIAL_H
+
+#include "qextserialport.h"
+
+class DriverBoardSerial
+{
+public:
+    DriverBoardSerial();
+    void sendDriverControlPacket();
+    int *getDriverResponsePacket();
+
+
+private:
+    QString requestedPort;
+    int requestedBaud;
+
+    QextSerialPort *driverBoardSerial;
+};
+
+#endif // DRIVERBOARDSERIAL_H

OSU SARL/Desktop Applications/EmbryoPickAndPlace/embryoprocesser.cpp

@@ -0,0 +1,96 @@
+#include "embryoprocesser.h"
+
+EmbryoProcesser::EmbryoProcesser(QObject *parent) :
+    QObject(parent)
+{
+    setupAndStartThread();
+    tempVariableSetup();
+    setupEmbryoCam();
+    setupEmbryoDetector();
+}
+
+void EmbryoProcesser::tempVariableSetup()
+{
+    //Varibles for setting up the hardware camera
+    requestedEmbryoCamNum = CAMERA1;
+    requestedEmbryoCamResolution.x = 640;
+    requestedEmbryoCamResolution.y = 480;
+    requestedEmbryoCamFramerate = 30;
+
+    //Variables for setting up the detection parameters
+    embryoDetectParams.minDistBetweenBlobs = 10.0f;
+    embryoDetectParams.filterByInertia = true;
+    embryoDetectParams.minInertiaRatio = .3;        //How round.... 0 is line, 1 is circle
+    embryoDetectParams.maxInertiaRatio = 1;
+    embryoDetectParams.filterByConvexity = false;
+    embryoDetectParams.minConvexity = 1;
+    embryoDetectParams.maxConvexity = 10;
+    embryoDetectParams.filterByColor = false;
+    embryoDetectParams.blobColor = 255;
+    embryoDetectParams.filterByCircularity = false;
+    embryoDetectParams.minCircularity = 3;
+    embryoDetectParams.maxCircularity = 10;
+    embryoDetectParams.filterByArea = true;
+    embryoDetectParams.minArea = 1.0f;
+    embryoDetectParams.maxArea = 30.0f;
+
+}
+
+void EmbryoProcesser::setupEmbryoCam()
+{
+    //Setup camera if camera available
+    embryoCam.open(0);
+
+   // isEmbryoCamOpen = embryoCam->isOpened();
+
+    //if(isEmbryoCamOpen == true){
+     //   embryoCam->set(CV_CAP_PROP_FRAME_WIDTH, requestedEmbryoCamResolution.x);
+//        embryoCam->set(CV_CAP_PROP_FRAME_HEIGHT, requestedEmbryoCamResolution.y);
+    //    embryoCam->set(CV_CAP_PROP_FPS, requestedEmbryoCamFramerate);
+    //}
+}
+
+void EmbryoProcesser::setupEmbryoDetector()
+{
+    if((isEmbryoCamOpen == true) && (embryoDetector.empty() == true)){
+        //Setup embryo detector if camera opened
+        embryoDetector = new SimpleBlobDetector(embryoDetectParams);
+        embryoDetector->create("Embryo Detector");
+
+        ableToProcess = true;
+    }
+}
+
+void EmbryoProcesser::destroyEmbryoDetector()
+{
+    if(embryoDetector.empty() == false){
+        embryoDetector.delete_obj();
+        ableToProcess = false;
+    }
+}
+
+void EmbryoProcesser::setupAndStartThread()
+{
+    thread = new QThread;
+
+    connect(thread, SIGNAL(started()), this, SLOT(onThreadStart()));
+
+    this->moveToThread(thread);
+
+    thread->start();
+
+}
+
+void EmbryoProcesser::run()
+{
+    //QMutex.lock();
+    if(ableToProcess == true){
+
+    }
+
+}
+
+void EmbryoProcesser::onThreadStart()
+{
+    run();
+}

OSU SARL/Desktop Applications/EmbryoPickAndPlace/embryoprocesser.h

@@ -0,0 +1,64 @@
+#ifndef EMBRYOPROCESSER_H
+#define EMBRYOPROCESSER_H
+
+#include <QObject>
+#include <QThread>
+#include <QImage>
+
+#include <opencv2/core/core.hpp>
+#include <opencv2/highgui/highgui.hpp>
+#include <opencv2/imgproc/imgproc.hpp>
+#include "opencv2/objdetect/objdetect.hpp"
+#include "opencv2/features2d/features2d.hpp"
+#include <vector>
+
+#define CAMERA1 0
+#define CAMERA2 1
+#define CAMERA3 2
+
+using namespace cv;
+using namespace std;
+
+class EmbryoProcesser : public QObject
+{
+    Q_OBJECT
+public:
+    explicit EmbryoProcesser(QObject *parent = 0);
+    void tempVariableSetup();       //Fills variables temporarily until settings saving has been accomplished
+
+    void setupEmbryoCam();          //Opens the video device using requested settings
+    void setupEmbryoDetector();     //Creates an instance of the detector
+    void destroyEmbryoDetector();   //Destroys the instance of the detector
+
+    void setupAndStartThread();
+    void stopAndDestroyThread();
+    void run();                     //Overridden function that is run when the thread is started
+
+public slots:
+    void onThreadStart();
+
+signals:
+    void qimgOriginalReady(QImage);
+    void qimgProcessedReady(QImage);
+    void qimgSettingsPreviewReady(QImage);
+
+
+private:
+    bool ableToProcess;
+
+    QThread *thread;
+
+    VideoCapture embryoCam;
+    bool isEmbryoCamOpen;
+    double requestedEmbryoCamNum;
+    CvPoint requestedEmbryoCamResolution;
+    int requestedEmbryoCamFramerate;
+
+
+    SimpleBlobDetector::Params embryoDetectParams;
+    Ptr<FeatureDetector> embryoDetector;
+    vector<cv::KeyPoint> potentialEmbryos;
+
+};
+
+#endif // EMBRYOPROCESSER_H

OSU SARL/Desktop Applications/EmbryoPickAndPlace/embryoprocessing.cpp

@@ -0,0 +1,8 @@
+#include <QMutex>
+#include "embryoprocessing.h"
+
+EmbryoProcessing::EmbryoProcessing(QObject *parent) : QObject(parent)
+{
+
+}
+

OSU SARL/Desktop Applications/EmbryoPickAndPlace/embryoprocessing.h

@@ -0,0 +1,64 @@
+#ifndef EMBRYOPROCESSING_H
+#define EMBRYOPROCESSING_H
+
+#include <QThread>
+#include <QImage>
+#include <QTimer>
+
+#include <opencv2/core/core.hpp>
+#include <opencv2/highgui/highgui.hpp>
+#include <opencv2/imgproc/imgproc.hpp>
+#include "opencv2/objdetect/objdetect.hpp"
+#include "opencv2/features2d/features2d.hpp"
+#include <vector>
+
+#define CAMERA1 0
+#define CAMERA2 1
+#define CAMERA3 2
+
+using namespace cv;
+using namespace std;
+
+class EmbryoProcessing : public QObject
+{
+    Q_OBJECT
+public:
+    explicit EmbryoProcessing(QObject *parent = 0);
+    ~EmbryoProcessing();
+    void tempVariableSetup();       //Fills variables temporarily until settings saving has been accomplished
+
+    void setupEmbryoCam();          //Opens the video device using requested settings
+    void setupEmbryoDetector();     //Creates an instance of the detector
+    void destroyEmbryoDetector();   //Destroys the instance of the detector
+
+    void setupAndStartThread();
+    void stopAndDestroyThread();
+    void run();                     //Overridden function that is run when the thread is started
+
+public slots:
+    void onThreadStart();
+
+signals:
+    void qimgOriginalReady(QImage);
+    void qimgProcessedReady(QImage);
+    void qimgSettingsPreviewReady(QImage);
+
+
+private:
+    bool ableToProcess;
+
+    QThread *thread;
+
+    VideoCapture *embryoCam;
+    bool isEmbryoCamOpen;
+    int requestedEmbryoCamNum;
+    CvPoint requestedEmbryoCamResolution;
+    int requestedEmbryoCamFramerate;
+
+
+    SimpleBlobDetector::Params embryoDetectParams;
+    Ptr<FeatureDetector> embryoDetector;
+    vector<cv::KeyPoint> potentialEmbryos;
+};
+
+#endif // EMBRYOPROCESSING_H

OSU SARL/Desktop Applications/EmbryoPickAndPlace/guiprocessandupdate.cpp

@@ -0,0 +1,7 @@
+#include "guiprocessandupdate.h"
+
+GuiProcessAndUpdate::GuiProcessAndUpdate(QWidget *parent, QMainWindow *MainWindowInput) :
+    QMainWindow(parent)
+{
+    MainWindow = MainWindowInput;
+}

OSU SARL/Desktop Applications/EmbryoPickAndPlace/guiprocessandupdate.h

@@ -0,0 +1,29 @@
+#ifndef GUIPROCESSANDUPDATE_H
+#define GUIPROCESSANDUPDATE_H
+
+#include <QMainWindow>
+#include <QTimer>
+#include <QThread>
+#include <QDesktopWidget>
+
+#include "mainwindow.h"
+
+class GuiProcessAndUpdate : public QMainWindow
+{
+    Q_OBJECT
+public:
+    explicit GuiProcessAndUpdate(QWidget *parent = 0, QMainWindow *MainWindowInput = 0);
+
+signals:
+
+public slots:
+
+private:
+    QThread *GuiProcessAndUpdateThread;
+    QTimer *mainGuiTimer;
+
+
+
+};
+
+#endif // GUIPROCESSANDUPDATE_H

OSU SARL/Desktop Applications/EmbryoPickAndPlace/main.cpp

@@ -0,0 +1,11 @@
+#include "mainwindow.h"
+#include <QApplication>
+
+int main(int argc, char *argv[])
+{
+    QApplication a(argc, argv);
+    MainWindow w;
+    w.showFullScreen();
+
+    return a.exec();
+}

OSU SARL/Desktop Applications/EmbryoPickAndPlace/mainwindow.cpp

@@ -0,0 +1,37 @@
+#include <QtCore>
+#include <QApplication>
+#include <QRect>
+#include <QDebug>
+#include <QTableView>
+
+#include "mainwindow.h"
+#include "ui_mainwindow.h"
+#include "guiprocessandupdate.h"
+
+
+MainWindow::MainWindow(QWidget *parent) :
+    QMainWindow(parent),
+    ui(new Ui::MainWindow)
+{
+    ui->setupUi(this);
+
+
+
+    //Class Initializations
+
+
+    //Signal and Slot Connections
+    connect(ui->actionExit, SIGNAL(triggered()), this, SLOT(close()));  //Connect exit button to application close
+    qDebug() << "Screen Width = " << QApplication::desktop()->geometry().width();
+    ui->tabWidget->setFixedWidth(QApplication::desktop()->geometry().width()-10);    //Set Width of tabWidget to ten pixels less than the screen resolution width
+    ui->tabWidget->setFixedHeight((QApplication::desktop()->geometry().height()*4)/5); //Set height of tabWidget to 9/10 the size of the screen height
+    ui->tabWidget->setTabText(1, "Table Data");
+    for(int i = 0 ; i < 100 ; i++){
+        ui->textGeneralStatusAndNotifications->append("This is a test...");
+    }
+}
+
+MainWindow::~MainWindow()
+{
+    delete ui;
+}

OSU SARL/Desktop Applications/EmbryoPickAndPlace/mainwindow.h

@@ -0,0 +1,35 @@
+#ifndef MAINWINDOW_H
+#define MAINWINDOW_H
+
+#include <QMainWindow>
+#include <QDesktopWidget>
+
+#include "embryoprocesser.h"
+
+namespace Ui {
+class MainWindow;
+}
+
+class MainWindow : public QMainWindow
+{
+    Q_OBJECT
+
+public:
+    //Public Variables
+    Ui::MainWindow *ui;
+
+    //Public Functions
+    explicit MainWindow(QWidget *parent = 0);
+    ~MainWindow();
+
+
+
+private:
+    QDesktopWidget desktopInfo;
+    EmbryoProcesser embryoProcesser;
+
+
+private slots:
+};
+
+#endif // MAINWINDOW_H

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/.gitignore

@@ -0,0 +1,47 @@
+syntax: glob
+*.pro.user*
+*.app
+*.moc
+*.prl
+Makefile*
+doc/html/
+*.framework/
+*.xcodeproj/
+debug/
+release/
+qtc-gdbmacros/
+*.rej
+*.orig
+*.obj
+*.swp
+*.dll
+*.exp
+*.ilk
+*.pdb
+*.lib
+Thumbs.db
+moc_*.cpp
+qrc_*.cpp
+*.o
+*.so.*
+*.so
+*.pdb
+ui_*.h
+*~
+.qmake.cache
+extserialport.prf
+lib/*
+*.orig
+*.exe
+*.vcproj
+*.vcproj.*.user
+*_resource.rc
+*.sln
+*.idb
+*.ncb
+*.suo
+examples/enumerator/enumerator
+examples/event/event
+examples/qespta/qespta
+examples/uartassistant/uartassistant
+object_script.*

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/ChangeLog

@@ -0,0 +1,267 @@
+Change history for QextSerialPort (formerly QwSerialPort):
+(Lines beginning with + represent new functionality, * represent changed or
+fixed functionality, - represent removed or deprecated functionality)
+
+Version 1.2 rc (2012 Debao Zhang)
+  * Build-system refactor
+  * Issue 145 : Custom baud support for MacOS
+  * Issue 36  : Fix Devices Notification for Vista
+  * Issue 54 and Issue 108 : Try detect more ports for windows
+  * Issue 139 : Adjust the name of generated library
+  - QextWinEventNotifier has been removed
+
+Version 1.2 beta2 (2012 Debao Zhang)
+  * Issue 124 : implement canReadLine
+  * Issue 122 : make Dtr default to TRUE under Windows.
+  * Issue 127 : fix QObject::MoveToThread brokes SerialPort on Windows
+  * Issue 129 : Add custom baud support for Windows.
+  * Issue 131 : Make sure portName returned by QextSerialEnumerator can be used by QextSerialPort
+  * Issue 134 : Make "make install" really works
+  * Issue 2: device discovery / removal notification on linux (read config_example.pri to figure out how to enable it.)
+
+Version 1.2 beta1 (2012 Debao Zhang)
+  * D-pointer and Q_PRIVATE_SLOT are used to moving private members from QextSerialPort to QextSerialPortPrivate
+  * qdoc3 instead of doxygen is used for generating documents
+  * MIT license header add to all sources files
+  + add a helper class QextWinEventNotifier for windows user, when user's SDK doesnot contain Qt's private files, this class will be auto selected.
+
+Version 1.2win-alpha (2007 Michal Policht)
+  + Added QextSerialEnumerator pre-alpha. Works under W2k and later versions of Windows.
+  + Event driven mechanism (alternative to polling) is now available on Windows.
+  - Removed default (=0) parameter from open() functions.
+  * Fixed bug #1714917 in Win_QextSerialPort::close() method (by Kurt).
+  * Fixed problem with lack of proper blocking in readData() on win32 (by Brandon Fosdick).
+  * Removed QT_THREAD_SUPPORT option. Now QextSerialPort must be always compiled with threads support.
+  * Mutexes are not static.
+  * setTimeout() now accepts only one parameter.
+  * bytesAvailable() on POSIX now shows 0 bytes instead of -1 when no bytes are available.
+  * bytesAvailable() is const.
+  * native POSIX file descriptors instead of QFile->handle() calls
+  + POSIX: Save and restore original termios when opening and closing the device
+  * POSIX: Only disable special characters on systems that support it
+  * POSIX: Use cfmakeraw(3) to get a non-canonical termios
+  + POSIX: Call close(2) in close() to actually close the device
+
+Version 1.1 (official release)
+
+Version 1.0.1
+  * Minor changes (mostly in test application)
+
+Version 1.0.0e (by Micha? Policht)
+  * Fixed bytesAvailable(). Includes buffered bytes to the result.
+  + Added isSequential() method.
+  + Provided test application
+
+Version 1.0.0d ( changes by Micha? Policht )
+  - Removed isOpen() overriden declaration/implementation from qextserialport's classes. isOpen() relies on QIODevice now.
+  - Removed bool portOpen variable. Replaced by internal QIODevice.openMode.
+  - Removed getChar(), putChar() overriden declaration/implementation. QIODevice can handle this.
+  * Calling open() with specified OpenMode invokes QIODevice::open() which result in proper openMode setting.
+  * readData(), writeData() are protected as in QIODevice declaration.
+  * QIODevice:: read() and write() function are working now (use them instead of readData() writeData()).
+  * readData(), writeData() don't check if port is open any more (read() and write() assures that). The same behaviour can be found in QFile for example.
+  * Fixed readLine().
+
+  * Fixed randomly crash on deletion bug on Windows ( by Stuart Nixon )
+  http://lists.trolltech.com/qt-interest/2007-02/thread00340-0.html#msg00351
+
+Version 0.9 (March 3, 2005) Stefan Sander <stefan-sander@users.sf.net>:
+  + Added a new precompiler constant, _TTY_FREEBSD_
+    to support FreeBSD port names.
+  + Added _TTY_WIN_ constant in qextserialport.pro win32:DEFINES
+    to have Windows port names as default when compiling on it.
+  - Removed construct() call from QextSerialBase constructors,
+    it is called indirectly through Win_QextSerialPort::construct()
+    and Posix_QextSerialPort::construct().
+  + Added construct() call to Win_QextSerialPort constructors.
+  + Added setTimeout(0, 500) call to Win_QextSerialPort::construct().
+  - Removed setTimeout(0, 500) call from Win_QextSerialPort(const char* name).
+  * Fixed Posix_QextSerialPort::open(int) control flow, now the port settings
+    are only applied if the associated file could be opened.
+  * Fixed masking CR to NL, in Posix_CommConfig.c_iflag 
+
+Version 0.8 (, 2003) (Alpha release):
+  * Added code to set the port timeouts in Win_QextSerialPort's default 
+    constructor.
+  * Fixed Posix_QextSerialPort::construct() to set up the port correctly.
+  * Fixed syntax errors in 2 ioctl() calls in posix_QextSerialPort.
+  * lastError is now initialized to E_NO_ERROR in the QextSerialBase 
+    constructor.    
+  * The select() call in posix_QextSerialPort::bytesWaiting() is now 
+    properly coded.  Previously it would always time out.
+  * Fixed runtime errors in the ioctl() calls for 
+    Posix_QextSerialPort::setDtr() and Posix_QextSerialPort::setRts().
+    Thanks to Marc Pignat.
+    
+Version 0.7 (June 15, 2002) <Bugfix release>:
+  (0.61 - unofficial release)
+  * Fixed a small bug in the initializations of the static members when 
+    QT_THREAD_SUPPORT was defined.
+  * Fixed a  bug that caused Borland's compiler to choke on Windows platforms
+    (which perversely actually stemmed from a shortcoming of Visual C++ that 
+    Borland doesn't have).
+    
+  (0.62 - unofficial release)
+  * Fixed a bug that gave Q_LONG the wrong typedef for QT versions prior to 
+    3.0. 
+    
+  (0.63 - unofficial release)       
+  * Fixed 2 incorrect references to Posix_Comm_Config.
+  * Fixed scoping of Posix_QextSerialPort::operator=().
+  * Posix_QextSerialPort::construct should now be coded correctly.
+  * Fixed return type for Posix_QextSerialPort::size().
+  
+  (0.64 - unofficial release)
+  * Fixed all the port settings functions to work properly when opening the 
+    port for the first time - previously none of the settings were being 
+    applied when the port was opened.
+  * Fixed an oversight in Win_QextSerialPort::open() that caused the setting
+    of port parameters to fail on NT and 2000 systems.
+    
+  (0.7 - official release)
+  * Fixed some calls to QextSerialBase constructors that no longer exist on 
+    the POSIX side.
+  * Fixed the bad memcpy()'s in the POSIX copy constructor.
+  * Fixed the Offset scoping problem under gcc 2.95.
+  * The CBAUD flag has been deprecated on some POSIX systems.  Fixed 
+    Posix_QextSerialPort::setBaudRate() to reflect this.
+  * Added construct() calls to all of the Posix_QextSerialPort constructors.
+  * Fixed double (and conflicting) typedefs of Offset when using QT versions 
+    prior to 3.0
+  * Changed the call to CreateFile() to CreateFileA() in 
+    Win_QextSerialPort.cpp.  This should get rid of problems for those using
+    Unicode or other multibyte character sets for their string literals.
+  * A few tweaks to the documentation.
+    
+  - Removed the protected Posix_Handle variable from Posix_QextSerialPort.
+  
+Version 0.6 (March 11, 2002) <Bugfix release>:
+  + Added a new precompiler constant, QTVER_PRE_30.  QT3 changed the return
+    types of some QIODevice functions. Therefore, if compiling on versions
+    of QT prior to 3.0, you should always define QTVER_PRE_30 in your project.
+    Also had to add some preprocessor blocks to support both 3.0 and earlier 
+    versions of QT.
+  + Added implementations of 2 of the new constructors added in 0.5 to both 
+    Win_QextSerialPort and Posix_QextSerialPort.
+
+  * The scoping of the enums used in the PortSettings struct has been fixed.
+  * QObject inheritance has been removed.  This should not affect the 
+    functionality of the classes.
+  * Replaced a few stray references to mutex->unlock() with UNLOCK_MUTEX() in 
+    the Windows code.
+  * Fixed several runtime errors caused by calling nonexistent members of 
+    QextSerialBase.
+  * Fixed a whole bunch of little things that were causing MSVC to choke when
+    compiling for Windows.
+
+Version 0.5 (February 15, 2002):
+  + There are 4 new macros (LOCK_MUTEX, UNLOCK_MUTEX, TTY_WARNING, and 
+    TTY_PORTABILITY_WARNING) that replace most of those ugly #ifdef blocks in
+    the code.  
+  + In place of the old namingConvention stuff, there is a new function, 
+    setName().  It is used to set the name of the device to be associated with
+    the object.  The new name() function can be used to retrieve the device 
+    name, which is stored in the new member variable portName.
+  + There is a new version of open() that takes a const char* as a parameter.
+    It can be used to specify the name of the device when it is opened rather
+    than at construction time.
+
+  * 3 constructors have been removed and 3 more added.  There is now a copy
+    constructor (and operator=()) as well as a constructor that takes a
+    PortSettings structure as a parameter, and another that takes both a
+    device name and a PortSettings structure.  As a result of these changes
+    the PortSettings structure declaration is no longer local to the
+    QextSerialBase class.  All of the removed constructors had to do with
+    the setNamingConvention() system.
+  * The static mutex member should now be reference-counted and only deleted 
+    when it is no longer referenced.  
+  * Most of the object construction duties have been pushed back into
+    QextSerialBase
+  * Fixed a couple resource leaks, mostly to do with unlocking the mutex
+    properly
+
+  - Removed the setNamingConvention() nonsense.  
+  - Removed all QStrings and calls to sprintf() for thread compatibility.
+  - Removed setNumber() functions as well as the portNumber member variable,
+    as they were only necessary under the setNamingConvention() system.
+
+  I am grateful to Jorg Preiss (Preisz?  Sorry, American keyboards don't have
+  an ess-tset character ;)) for his invaluable input on most of the changes
+  that went into this version.
+
+Version 0.4 (March 20, 2001):
+  + All of the classes now derive from QObject as well as QIODevice.  This
+    is pretty much useless at the moment - signals and slots may be used
+    to implement asynchronous communications in a future version
+  + Added configurable timeouts via the setTimeout() function.  The default
+    timeout for read and write operations is now 500 milliseconds
+  + There is now a functional .pro file for the library (thanks to
+    Gunnstein Lye)
+  + The prefixes for all of the classes have changed from Qw to Qext, in
+    compliance with the qt-addons project standard
+
+  * Fixed a bug that caused port settings to be restored incorrectly when
+    switching ports with setNumber()
+  * Minor changes to QextSerialBase::setNumber().  Functionality should now
+    reflect the documentation, which has also been updated to reflect the
+    changes that went in on version 0.3.
+  * Some fixes to the documentation.  The Posix_QextSerialPort and
+    Win_QextSerialPort classes should no longer have any unnecessary
+    references to inapplicable platforms, and the documentation for open() has
+    been updated.
+  * Should now compile without QT_THREAD_SUPPORT defined (ie, in single-
+    threaded environments), although it will require slight changes to the
+    makefile (tmake "CONFIG-=thread" should work)
+  * Fixed a few compilation issues, especially on the POSIX side (should
+    compile under Linux now :))
+  * POSIX code is a little cleaner and more efficient
+  * Various small fixes to the documentation
+  * Constants now follow a consistent naming convention, with underscores at
+    the beginning and end of each.  For example TTY_POSIX has become
+    _TTY_POSIX_
+    
+Version 0.3 (Feb. 14, 2001):
+  + Added a warning that appears when QwSerialPort is compiled on a POSIX
+    platform that does not implement 76800 baud operation.  In this situation
+    QwSerialPort will also switch to 57600 baud.
+  + Major code reorganization - there are now 4 classes instead of 1.  This
+    should remove a lot of the #ifdef...#else...#endif constructs and
+    hopefully make the code easier to read.  Including the class in your
+    project is still done by including QwSerialPort.h and instantiating a
+    QwSerialPort object.
+
+  * The serial port associated with a QwSerialPort object is no longer
+    opened on construction, or upon calling the setNumber() function.  You
+    must now explicitly call open() to open the port.
+
+Version 0.2 (Jan. 3, 2001):
+  + Added lastError() function with rudimentary error codes
+  + Better documentation
+  + Added ability to examine the empty/not empty state of a port's input
+    buffer with atEnd()
+  + Added ability to retrieve the number of bytes in a port's input buffer
+    with size() (thanks to Olivier Tubach)
+  + Added ability to turn off portability warnings by defining
+    TTY_NOWARN_PORT in your project
+  + Added ability to turn off all warning messages by defining TTY_NOWARN
+    in your project
+  + Added ability to select POSIX serial functions in Windows NT/2000 by
+    defining TTY_POSIX in your project (untested)
+  + Added control over RTS and DTR lines with setRts() and setDtr()
+    respectively
+  + Added ability to query line status using lineStatus().
+  + Added readLine() functionality (thanks to Olivier Tubach)
+  + Added bytesWaiting(), a non-const/thread-safe version of size()
+  + The class should now be thread-safe through the use of a recursive
+    QMutex (untested)
+
+  * Fixed a bug that could cause hardware flow control not to work on some
+    POSIX systems
+  * Put in a few missing fileno() calls in the POSIX code
+  * Fixed a few syntax errors that caused compilation to fail on POSIX systems
+
+  - BAUD0 is no longer a valid baud rate setting - to drop the DTR line,
+    call setDtr(FALSE)
+
+Version 0.1 (Dec. 11, 2000):
+  Initial public release.

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/LICENSE

@@ -0,0 +1,94 @@
+From QextSerialPort 1.2-beta on, we use MIT license for QextSerialPort project.
+
+== License ==
+
+    Copyright (c) 2000-2003 Wayne Roth
+    Copyright (c) 2004-2007 Stefan Sander
+    Copyright (c) 2007 Michal Policht
+    Copyright (c) 2008 Brandon Fosdick
+    Copyright (c) 2009-2010 Liam Staskawicz
+    Copyright (c) 2011 Debao Zhang
+    
+    Web: http://code.google.com/p/qextserialport/
+    
+    Permission is hereby granted, free of charge, to any person obtaining
+    a copy of this software and associated documentation files (the
+    "Software"), to deal in the Software without restriction, including
+    without limitation the rights to use, copy, modify, merge, publish,
+    distribute, sublicense, and/or sell copies of the Software, and to
+    permit persons to whom the Software is furnished to do so, subject to
+    the following conditions:
+    
+    The above copyright notice and this permission notice shall be
+    included in all copies or substantial portions of the Software.
+    
+    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+    EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+    MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+    NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+    LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+    OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+    WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+== Why license needed? ==
+
+ Many users complains that, without a proper licence they can not use this library.
+
+ * http://groups.google.com/group/qextserialport/browse_thread/thread/0e8756920b01da82
+
+    Hi, 
+    we are considering using a modified version of QExtSerialPort in one of our 
+    projects (Qt Creator, http://qt.gitorious.org/qt-creator). 
+    Would it be possible to add license header information or a license file to the   
+    QExtSerialPort code base? - This would make re-use of the code base easier. 
+    If that is not  possible, could we redistribute the source code with BSD- 
+    license headers manually added? 
+
+And
+
+    I am also considering packaging the software for Debian, but I 
+    couldn't do it yet just because of the license. 
+
+ * http://code.google.com/p/qextserialport/issues/detail?id=8
+
+    Questions:
+    Can I use qextserialport in a commercial product?
+    If yes, how?
+    Compile it in? I guess no.
+    If I can use it as a library, how should the README be formulated?
+    Is the "MIT license" from 2008 appropriate?
+
+== Why can we use MIT? ==
+
+Form the history of [http://lists.trolltech.com/qt-interest/2004-12/msg01022.html qt-interest mail list]
+
+ * Wayne Roth, the original author of the project, had said that:
+
+    the code is in the public domain. Do whatever you like with it. Right 
+    now I have too many other things to do to put any serious time into
+    fixing it.  Trolltech should be aware of this already; they asked 
+    about a license when they offered to host the tarball.
+
+ * Stefan Sander, the maintainer of qextserialport on sourceforge, said that
+
+    Hello,
+    My project registration at !SourceForge have been approved.
+    http://www.sf.net/projects/qextserialport
+    I thought an initial licence of Public Domain would be best solution.
+    Someone wrote: - Because its public domain, some could fork it under different licenses -
+
+And from [http://groups.google.com/group/qextserialport/browse_thread/thread/fbcddbfb4a0b5a51?pli=1 this thread] on qesp mail list, we can see that, current maintainers and users agree with a MIT licence.
+
+ * Brandon Fosdick,
+
+    I would vote for BSD or MIT :) 
+
+ * Liam Staskawicz,
+
+    That works for me - let's call it MIT and go for it :) 
+
+And from [[https://groups.google.com/forum/?fromgroups#!topic/qextserialport/P_5TrNHBICE this other thread]] on the same mailing list:
+
+ * Michal Policht,
+
+    I agree to license.

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/README

@@ -0,0 +1,64 @@
+= About QextSerialPort =
+
+QextSerialPort provides an interface to old fashioned serial ports for Qt-based applications. It currently supports Mac OS X, Windows, Linux, FreeBSD. 
+
+    http://code.google.com/p/qextserialport/
+
+== How to use (1) ==
+
+ * Download the source code.
+
+ * Put the source code in any directory you like. For example, 3rdparty:
+
+            |-- project.pro
+            |-- ....
+            |-- 3rdparty\
+            |     |-- qextserialport\
+            |     |
+
+ * Add following line to your qmake project file:
+
+            include(3rdparty/qextserialport/src/qextserialport.pri)
+
+ * Using QextSerialPort in your code. Enjoy it!
+
+            #include "qextserialport.h"
+            ....
+            QextSerialPort * port = new QextSerialPort();
+            ....
+            
+== How to use (2) ==
+It's very easy to compile QextSerialPort directly into your application
+(see above section), however, we would prefer to use it as a shared library.
+
+ * Download the source code, and put it in any location you like.
+
+ * Run following command to generate library. 
+
+          qmake
+          make (or nmake)
+          sudo make install (or nmake install)
+
+ * Add following line to your project's file
+
+          CONFIG += extserialport
+
+ * Using QextSerialPort in your code. Enjoy it!
+
+            #include "qextserialport.h"
+            ....
+            QextSerialPort * port = new QextSerialPort();
+            ....
+
+== Build Documents ==
+ * Run
+           qmake
+           make docs
+
+ * Note: More information can be found in doc/readme.txt
+
+== Build examples ==
+ * Goto examples directory, then run
+           qmake (or qmake -r)
+           make (or nmake)
+

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/doc.pri

@@ -0,0 +1,12 @@
+OTHER_FILES += $$PWD/qextserialport.qdocconf
+
+#name of qdoc3 has been changed to qdoc under Qt5
+QESP_QDOC = qdoc
+lessThan(QT_MAJOR_VERSION, 5):QESP_QDOC = qdoc3
+
+docs_target.target = docs
+docs_target.commands = $$QESP_QDOC $$PWD/qextserialport.qdocconf
+
+QMAKE_EXTRA_TARGETS = docs_target
+QMAKE_CLEAN += "-r $$PWD/html"
+

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/examples/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/examples/enumerator.qdoc

@@ -0,0 +1,16 @@
+/*!
+    \example examples/enumerator
+    \title enumerator Demo
+
+    The example demonstrates how to use QextSerialEnumerator.
+
+    Include the proper header file
+    \snippet examples/enumerator/main.cpp 0
+
+    Get available ports in the system.
+    \snippet examples/enumerator/main.cpp 1
+
+    Output
+    \snippet examples/enumerator/main.cpp 2
+*/
+

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/examples/images/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/examples/qespta.qdoc

@@ -0,0 +1,7 @@
+/*!
+    \example examples/qespta
+    \title qespta Demo
+
+    The example demonstrates how to use QextSerialPort.
+*/
+

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/examples/uartassistant.qdoc

@@ -0,0 +1,24 @@
+/*!
+    \example examples/uartassistant
+    \title UartAssistant Demo
+
+    The example demonstrates how to use QextSerialPort.
+
+    Initialze UI element.
+    \snippet examples/uartassistant/dialog.cpp 0
+
+    Initialize serial port
+    \snippet examples/uartassistant/dialog.cpp 1
+
+    port Settings
+    \snippet examples/uartassistant/dialog.cpp 2
+
+    Open or Close the port.
+    \snippet examples/uartassistant/dialog.cpp 3
+
+    Read from or Write to the port
+    \snippet examples/uartassistant/dialog.cpp 4
+
+    \image uartassistant.png
+*/
+

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/index.qdoc

@@ -0,0 +1,199 @@
+/*!
+    \page index.html
+    \title QextSerialPort Manual
+
+    \section1 Overview
+      QextSerialPort provides an interface to old fashioned serial ports for
+      Qt-based applications. It currently supports Mac OS X, Windows, Linux, FreeBSD. 
+
+      From QextSerialPort 1.2-beta on, license of the project has been changed to MIT.
+
+      \list
+         \o Revision 0.9.x is Qt 2 & 3 compatible.
+         \o Revision 1.x.x is Qt 4 compatible.
+         \o From revision 1.2beta1 on, Qt 5 support is added.
+      \endlist
+
+        
+    \section1 Classes
+      \list
+      \o \l QextSerialPort encapsulates a serial port on both POSIX and Windows systems.
+      \o \l QextSerialEnumerator enumerates ports currently available in the system.
+      \endlist
+    
+    \section1 Getting Started
+
+
+    \section2 Usage(1): Source Code Only
+
+ The package contains a qextserialport.pri file that allows you to integrate the component into programs that use qmake for the build step.
+
+      Download the source code.
+      Put the source code in any directory you like. For example, 3rdparty:
+
+      \code
+       |-- project.pro
+       |-- ....
+       |-- 3rdparty\
+       |     |-- qextserialport\
+       |     |
+      \endcode
+
+      Add following line to your qmake project file:
+      \code
+      include(pathToPri/qextserialport.pri)
+      \endcode
+
+      Then, using QextSerialPort in your code
+      \code
+      #include "qextserialport.h"
+      ... 
+      MyClass::MyClass()
+      {
+          port = new QextSerialPort("COM1");
+          connect(port, SIGNAL(readyRead()), this, SLOT(onDataAvailable()));
+          port->open();
+      }
+  
+      void MyClass::onDataAvailable()
+      {
+          QByteArray data = port->readAll();
+          processNewData(usbdata);
+      }
+      \endcode
+
+    \section2 Usage(2): shared library
+      Although QextSerialPort can be directly compiled into your application, You may prefer
+      to use QextSerailPort as an library, which is very easy too.
+
+     1. Download the source code, and put it in any location you like.
+    
+     2. Goto the top level directory ,run following command to generate library.
+    
+          \code
+          qmake
+          sudo make install (or nmake install)
+          \endcode
+    
+     3. Add following line to your project's file
+    
+          \code
+          CONFIG += extserialport
+          \endcode
+    
+     4. Using QextSerialPort in your code. Enjoy it!
+    
+          \code
+          #include "qextserialport.h"
+          ....
+          QextSerialPort * port = new QextSerialPort();
+          ....
+          \endcode
+
+    \section2 Usage(3): Static library
+
+        Someone prefer to use QextSerailPort as static library.
+
+        Open the project file: qextserialport.pro, add uncomment follow line
+
+          \code
+           # CONFIG += qesp_static
+          \endcode
+
+        Then follow the same steps as shared library
+
+          \code
+           qmake
+           sudo make install
+          \endcode
+
+        The static library, the header files, and the feature file will be installed to your system.
+
+        Add following line to your qmake's project file:
+
+          \code
+          CONFIG += extserialport
+          \endcode
+    
+      \section1 Platform Special
+
+      \section2 For MacX: Build as framework
+
+      Open the project file: *qextserialport.pro*, and uncomment follow line
+
+          \code
+           # CONFIG += qesp_mac_framework
+          \endcode
+
+      Then follow the same steps as shared library, Goto the top level directory , and run
+
+          \code
+           qmake
+           sudo make install
+          \endcode
+ 
+      The framework which includes libraries and the header files, and the feature file will be installed to your system.
+
+      Add following line to your qmake's project file:
+
+          \code
+           CONFIG += extserialport
+          \endcode
+
+      \section2 For Linux: Enable udev
+
+       Open the project file: *qextserialport.pro*, uncomment follow line
+
+          \code
+           #linux*:CONFIG += qesp_linux_udev
+          \endcode
+
+       Note, If you are using the usage(1), Add following line before include the qextserialport.pri file. 
+          \code
+           CONFIG += qesp_linux_udev
+          \endcode
+
+
+     \section2 Build documents
+      \code
+        make docs
+      \endcode
+
+    \section1 Examples
+      \list
+      \o \l examples/enumerator
+      \o \l examples/qespta
+      \o \l examples/uartassistant
+      \endlist
+
+    \section1 Resources
+        \section2  Nokia(Trolltech)
+        \list
+          \o  \l {http://doc.trolltech.com/qq/qq12-iodevice.html} {Writing a Custom I/O Device}
+          \o  \l {http://doc.trolltech.com/3.3/qiodevice.html} {Qt 3.3: QIODevice Class Reference}
+          \o  \l {http://doc.trolltech.com/4.7/qiodevice.html} {Qt 4.7: QIODevice Class Reference}
+        \endlist
+        \section2  MSDN
+        \list
+          \o \l {http://msdn.microsoft.com/library/default.asp?url=/library/en-us/devio/base/communications_resources.asp} {Communications Resources}
+           \o \l {http://msdn.microsoft.com/library/default.asp?url=/library/en-us/devio/base/about_communications_resources.asp} {About Communications Resources}
+           \o \l {http://msdn.microsoft.com/library/default.asp?url=/library/en-us/devio/base/using_communications_resources.asp}{Using Communications Resources}
+           \o \l {http://msdn.microsoft.com/library/default.asp?url=/library/en-us/devio/base/communications_functions.asp} {Communications Functions}
+           \o \l {http://msdn.microsoft.com/library/default.asp?url=/library/en-us/devio/base/communications_structures.asp} {Communications Structures}
+        \endlist
+        \section2  TLDP
+        \list
+           \o \l {http://www.tldp.org/HOWTO/Serial-HOWTO.html}{Serial HOWTO}
+           \o \l {http://www.tldp.org/HOWTO/Serial-Programming-HOWTO/}{Serial Programming HOWTO}
+        \endlist
+        \section2  Other
+        \list
+           \o \l {http://www.easysw.com/~mike/serial/serial.html} {Serial Programming Guide for POSIX Operating Systems}
+        \endlist
+
+*/
+
+/*!
+  \page classes.html
+  \generatelist annotatedclasses
+*/

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/qextserialport.qdocconf

@@ -0,0 +1,53 @@
+# Run qdoc3 from the directory that contains this file.
+project = qesp
+description = QextSerialPort Reference Documentation
+url = http://code.google.com/p/qextserialport
+
+outputencoding = UTF-8
+language = Cpp
+
+#Paths are relative to the location of this file
+headerdirs               = . ../src
+sourcedirs               = . ../src
+exampledirs              = ../examples ..
+imagedirs                = ./examples/images images
+
+Cpp.ignoretokens         = QEXTSERIALPORT_EXPORT 
+
+indexes = $QTDIR/doc/html/qt.index
+
+qhp.projects             = qesp
+qhp.qesp.file            = qesp.qhp
+qhp.qesp.namespace       = com.google.code.qextserialport.120
+qhp.qesp.virtualFolder   = qdoc
+qhp.qesp.indexTitle      = QextSerialPort Reference Documentation
+qhp.qesp.indexRoot       = 
+qhp.qesp.extraFiles      = style/style.css
+
+
+#------------------------------------------------------------------
+outputdir = html
+outputformats = HTML
+
+headers.fileextensions = "*.h"
+sources.fileextensions = "*.cpp *.qdoc"
+
+HTML.templatedir        = .
+HTML.stylesheets        = style/style.css
+
+HTML.headerstyles       = "  <link rel=\"stylesheet\" type=\"text/css\" href=\"style/style.css\" />\n"
+HTML.endheader          = "</head>\n"
+
+HTML.postheader         = "<table border=\"0\" cellpadding=\"0\" cellspacing=\"0\" width=\"100%\">\n" \
+                          "<tr>\n" \
+                          "<td class=\"postheader\" valign=\"center\">" \
+                          "<a href=\"index.html\">Home</a> &middot;" \
+                          " <a href=\"classes.html\">All Classes</a> &middot;" \
+                          "</td></tr></table>"
+
+HTML.footer             = "<p /><address><hr /><div align=\"center\">\n" \
+                          "<table width=\"100%\" cellspacing=\"0\" border=\"0\"><tr class=\"address\">\n" \
+                          "<td width=\"40%\" align=\"left\">Copyright &copy; 2000-2012</td>\n" \
+                          "<td width=\"20%\" align=\"center\"><a href=\"http://code.google.com/p/qextserialport\">QextSerialPort Project</a></td>\n" \
+                          "<td width=\"40%\" align=\"right\"><div align=\"right\">QextSerialPort Manual</div></td>\n" \
+                          "</tr></table></div></address>"

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/readme.txt

@@ -0,0 +1,35 @@
+Note: 
+
+  If you are using qextserialport-XXX.tar.gz, the qesp.qch and
+  html files have been provided.
+
+  Open the file "html/index.html" using your web browser.
+  Or integrated the "html/qesp.qch" into your QtCreator.
+
+
+== How to generate help files? ==
+
+Simply run following commands at toplevel directory.
+    qmake
+    make docs
+
+Or run the following command at this directory
+    qdoc3 qextserialport.qdocconf
+
+Then a folder called "html" will be generated. 
+Open the file "html/index.html" using your web browser.
+
+== How to integrated into Qt Creator or Qt Assistant? ==
+
+Once the html files are generated. run following commands
+   cd doc/html
+   qhelpgenerator qesp.qhp
+
+A file called "qesp.qch" will be generated.
+
+For Qt Assistant: 
+   Edit ==> Preferences ==>  Documentations ==> Add...
+
+For Qt Creator
+   Tools ==> Options ==> Help ==> Documentations ==> Add...
+ 

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/style/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/doc/style/style.css

@@ -0,0 +1,137 @@
+a:link, a:visited {
+    color: #00732F;
+    text-decoration: none;
+    font-weight: bold;
+}
+
+body {
+    font: normal 400 14px/1.2 Arial;
+    margin-top: 85px;
+}
+
+h1 {
+    margin: 0;
+}
+
+h2 {
+    font: 500 20px/1.2 Arial;
+}
+
+h3.fn, span.fn {
+    -moz-border-radius: 7px 7px 7px 7px;
+    -webkit-border-radius: 7px 7px 7px 7px;
+    border-radius: 7px 7px 7px 7px;
+    background-color: #F6F6F6;
+    border-width: 1px;
+    border-style: solid;
+    border-color: #E6E6E6;
+    word-spacing: 3px;
+    padding: 3px 5px;
+}
+
+table, pre {
+    -moz-border-radius: 7px 7px 7px 7px;
+    -webkit-border-radius: 7px 7px 7px 7px;
+    border-radius: 7px 7px 7px 7px;
+    background-color: #F6F6F6;
+    border: 1px solid #E6E6E6;
+    border-collapse: separate;
+    font-size: 12px;
+    line-height: 1.2;
+    margin-bottom: 25px;
+    margin-left: 15px;
+}
+
+table td {
+    padding: 3px 15px 3px 20px;
+}
+
+table tr.even {
+    background-color: white;
+    color: #66666E;
+}
+
+table tr.odd {
+    background-color: #F6F6F6;
+    color: #66666E;
+}
+
+li {
+    margin-bottom: 10px;
+    padding-left: 12px;
+}
+
+.cpp {
+    display: block;
+    margin: 10;
+    overflow: hidden;
+    overflow-x: hidden;
+    overflow-y: hidden;
+    padding: 20px 0 20px 0;
+}
+
+.footer {
+    margin-top: 50px;
+}
+
+.memItemLeft {
+    padding-right: 3px;
+}
+
+.memItemRight {
+    padding: 3px 15px 3px 0;
+}
+
+.qml {
+    display: block;
+    margin: 10;
+    overflow: hidden;
+    overflow-x: hidden;
+    overflow-y: hidden;
+    padding: 20px 0 20px 0;
+}
+
+.qmldefault {
+    padding-left: 5px;
+    float: right;
+    color: red;
+}
+
+.qmlreadonly {
+    padding-left: 5px;
+    float: right;
+    color: #254117;
+}
+
+.rightAlign {
+    padding: 3px 5px 3px 10px;
+    text-align: right;
+}
+
+.title {
+    background-color: white;
+    color: #44A51C;
+    font-family: Verdana;
+    font-size: 35px;
+    font-weight: normal;
+    left: 0;
+    padding-bottom: 5px;
+    padding-left: 16px;
+    padding-top: 20px;
+    position: absolute;
+    right: 0;
+    top: 0;
+}
+
+.toc {
+    float: right;
+    -moz-border-radius: 7px 7px 7px 7px;
+    -webkit-border-radius: 7px 7px 7px 7px;
+    border-radius: 7px 7px 7px 7px;
+    background-color: #F6F6F6;
+    border: 1px solid #DDD;
+    margin: 0 20px 10px 10px;
+    padding: 20px 15px 20px 20px;
+    height: auto;
+    width: 200px;
+}

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/examples/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/examples/enumerator/desktop.ini

@@ -0,0 +1,2 @@
+[.ShellClassInfo]
+IconResource=C:\Users\Corwin\AppData\Roaming\Insync\App\res\shared-folder-vista-7.ico,0

OSU SARL/Desktop Applications/EmbryoPickAndPlace/qextserialport-1.2rc/examples/enumerator/enumerator.pro

@@ -0,0 +1,6 @@
+TEMPLATE = app
+DEPENDPATH += .
+CONFIG += console
+include(../../src/qextserialport.pri)
+SOURCES += main.cpp
+